Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U574106 in the current build, Tomato 200607 #2

Unigene SGN-U318644

Unigene Basic Information

Unigene ID:	SGN-U318644
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	318644
mRNA sequence:	Length: 1159 bp

>SGN-U318644 Tomato 200607 #1 (16 members)
TCCGGCCCACAACCGGGAAAACAAAACCCTACAAAATCCGTTTTTTTTTGGTGAATTTGAACAATTGAAGTGAAGTTGAAGAAGTAAACA
TACCAAATAATTGAACCATGGCAGCTGCAGATCGCAAGCAAAACATTGTTTCAGCTCTATGCAAGCACCTTTCAACGTTGTCATTAGACC
CTAATTCGTATTCAACTAATTTGGATAAAGACATTAAAAGCTTGTGTATAGACATTTTCAATTCTTCCCCAAGTGGGCCGTCTATCACAA
AAGATAATGAGTTAATGAAGTGGATCGAATTTGCGAGTAACTTCCCTGTTGATTCTGGGACAAGCCTTAAAGCTCTAAGTGAGTTGAATG
AGGATTTGAGTAAGAAGTCTGTTATTTTGGGCAACGGGTTGAAGATTTCAGAAGCTGATATTGTTGTCTTTGCCGCTGTGCATTCATCCG
TGATCAGTCTTTCAAACTCTGACAGAAACAAATTGCCGTACTTGCTTAGATGGATGGACTATATCCAGACTAAAGGTGACGTCGGAGACG
CATTCCAAAAAATTTTGCTGGAGAAAGTCCAATTTGAGCCACCTGCAGCAAAATGTGTGAAGAAGGTAGAAGTAGAGTCAAATGCCAAAA
AAACTGACACAGAGACCAAACCGGCTAGTAGTTCAGATGTTGACTCCAAAAAAAAGAACAATAGTGGCGTGAAGAAAGCTGCTGCAGATA
ATCAAACTTCTGCAGAAAAGAAGTTGCCTGAGAAGGTAGATGACAAAGATAAAGATATCAGTGTTAGTTTGCTAAAATTACAGATTGGCC
ACATTAAAAAAGCATGGAAACATCCATCAGCTGAGAGCTTACTGGTTGAGGAGATAGATGTTGGAGAAGCAAAATGTCGGCAAGTAGTTA
GTGGCCTGGCTAAGTTTTGCAGTCCAGAACAGTTAACTAATCGCCTTGTGGTGCTTGTGACAAACATGAAACCATCAAAATTACGTGATG
TCATATCAGAGGGAATGGTATTATGTGCTTCTAATGAAGATCATACTGTGGTGGAGCCTCTTGTAGCACCAGAAGGTGCCAAAGTTGGGG
AATGCATCTCATTTGCTGGGCATGATGGAAAACCAGAAGATGTTCTGAATCCTAAAAAGAAGCAGTTTGAGAAAATTGC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	5
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1

mRNA member sequences (16)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102108	Nucleic acid-binding OB-fold subgroup Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) t-RNA-binding region - Molecular Function: tRNA binding (GO:0000049)	22
2	122365	t-RNA-binding region - Molecular Function: tRNA binding (GO:0000049) Endothelial monocyte-activating polypeptide II precursor pro-EMAP II - Molecular Function: tRNA binding (GO:0000049) Glutathione S-transferase C-terminal-like Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup	5
5	131878	t-RNA-binding region - Molecular Function: tRNA binding (GO:0000049) Endothelial monocyte-activating polypeptide II precursor pro-EMAP II - Molecular Function: tRNA binding (GO:0000049) Glutathione S-transferase C-terminal-like Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup	6

Preceding Unigenes (1)

Unigene	Build
SGN-U217161	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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