Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U578496 and SGN-U580678 in the current build, Tomato 200607 #2

Unigene SGN-U313308

Unigene Basic Information

Unigene ID:	SGN-U313308
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313308
mRNA sequence:	Length: 1361 bp

>SGN-U313308 Tomato 200607 #1 (88 members)
TTGAAGATAAGCAAAGCCCTCTATGACAAACCAAATCGGACACGTGTCCACCTGATATTTCATTCTTGATTTTCCTCAAAATTACAACAG
TTTTCGGTTCTTGTCTTCAAAGTGGTGGTTGGAATTTTGAGCTTTGGTGCTTTCAAATTGACAAAGTACCAACCTTTATTCTCAATTTTC
AACAAGGCAAAAGTTTGCTTCAAGAAAATTTTAAAAAAAAACAATCAATGGCGACTGCTTCTTCTTTGGGTTCATCAACTCTGTTACAAT
CCCAAATTAGTGGATTTGGCGGGAGTCAAAAGATTTCTTTCTCCAACCCCAATTCACTCACTTTCACCAGGAGGAGAATTCAAACTGTGG
TGACAGCTTCTTCTCGGGTGGATAAGTTCTCGAAAAGCGACATTATTGTTTCTCCATCCATCCTTTCTGCTAACTTTTCTAAATTAGGAG
AGCAGGTGAAAGCAGTTGAGCAGGCAGGCTGCGACTGGATTCATGTAGATGTGATGGATGGTCGATTTGTTCCAAATATAACTATTGGAC
CCCTTGTAGTTGATTCCTTGCGCCCTATCACAGATCTTCCACTGGATGTGCATCTGATGATTGTCGAACCTGACCAGAGAGTACCTGACT
TCATAAAAGCAGGTGCTGATATTGTCAGTGTTCATTGTGAGCAATCTTCTACAATCCACTTGCATCGTACAATAAACCAGATTAAAAGTT
TGGGAGCTAAAGCTGGGGTTGTCCTCAATCCTGGAACCCCTTTAACCGCAATTGAATATGTCCTTGATGCTGTTGATCTGGTGCTGATTA
TGTCTGTAAACCCTGGATTTGGGGGACAGAGCTTCATTGAGAGTCAGGTCAAGAAAATCTCAGACTTGAGAAAAATATGTGCTGAGAAGG
GAGTAAACCCTTGGATTGAAGTTGATGGTGGAGTTGGTCCCAAAAATGCTTACAAGGTCATTGAAGCCGGAGCCAATGCCTTGGTAGCAG
GTTCTGCTGTCTTTGGAGCTCCTGATTATGCTGAAGCTATTAAAGGGATCAAGACAAGCAAAAGGCCTGCAGCAGTTGCTGTATGAGGTT
CCGGCCTACTTGGTTCAAGTAGTCACAGCTGTTAATACGGAATTGTTTCTGTGTATGTTCATCGTCAATTTCTGATTTTCTTCATCTTTT
TCAGTCAAATTCTCCTCGTTATCATATCTTTATAACCTTGTGTGATCAGTAGAGGGAACCATGTTTAAGGTTGACCTTCATATCTTTGTA
TTCAGGAAACATACAAAATGTTTATGTCACGTGTATTTGCAACAGAGAGATTTCTGTTATCCATATATGTTTTACAAAAAAAAAAAAAAA
AAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (22)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	6
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	13
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	6
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	20
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	5
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	4
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (88)

To view details for a particular member sequence, click the SGN-E# identifier.
[Hide Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 2 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102503	Ribulose-phosphate 3-epimerase - Molecular Function: ribulose-phosphate 3-epimerase activity (GO:0004750) - Biological Process: carbohydrate metabolism (GO:0005975) Ribulose-phosphate binding barrel	13
2	119966	Ribulose-phosphate 3-epimerase - Molecular Function: ribulose-phosphate 3-epimerase activity (GO:0004750) - Biological Process: carbohydrate metabolism (GO:0005975) Ribulose-phosphate binding barrel	11
5	134091	Ribulose-phosphate 3-epimerase - Molecular Function: ribulose-phosphate 3-epimerase activity (GO:0004750) - Biological Process: carbohydrate metabolism (GO:0005975) Ribulose-phosphate binding barrel	4

Preceding Unigenes (1)

Unigene	Build
SGN-U213510	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: