Sol Genomics Network

Unigene SGN-U580658

Unigene Basic Information

Unigene ID:	SGN-U580658
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1811 bp

>SGN-U580658 Tomato 200607 #2 (115 members)
GTTACGGGATGCCTAAGGCTAAACTCCATCTATGACAACTAAATTAAAATACTAATTACCAATTTTTTAACTAAAAGACAGAAATTGAAC
CAAACGAGAAAAGCATGTGGTGAAGGATAAATTGCGCTCACCATTTAGTTAACTTCACTTCACCCATTTTGCTACGACAAACGCAATTCG
CTCACGTGCGCGCTCTCCTCCTTCCATGGCTATTCCTCTTCAATTCTCTAGTATATCCACTCGCACAGATCTCTCCTTGCCGGAGACTAG
AACTTTCAGGTTACCGAAACCTTTCTCCGTCATCAGATGCTCCGCCGGCGAACCTGTTCCTTCCTCGTCGGCTACTGCTGAGTCAGAGTT
CGATGCTAAGGTTTTCCGGAAGAATCTGACCAGAAGTGCTAATTACAATCGTAAAGGTTTTGGACACAAAGAAGCTACTCTTGAACTCAT
GAATCGCGAATATACCAGTGATATCATCAAGAAATTGAAGGAGAATGAATTTGAGTATACATGGGGAAACGTAACCGTAAAACTTGCAGA
GTCCTATGGTTTCTGTTGGGGGGTTGAGCGTGCAGTTCAGATTGCTTATGAAGCGAGGAAACAGTTTCCAACAGAGAGGATTTGGATAAC
TAATGAAATTATTCACAACCCCACTGTGAATAAGAGGCTAGAGGATATGGATGTTAAGAACATTCCACTTGAGGAAGGGAAGAAAAACTT
TGATGTTGTTGACAAGGATGATGTTGTGGTTTTGCCTGCTTTTGGGGCTGCTGTTGATGAAATGTTGGTTTTGAGTGATAAAAACGTACA
AATTGTTGATACAACCTGCCCGTGGGTGACTAAGGTTTGGAACACGGTTGAAAAGCACAAGAAGGGAGAATATACCTCCATTATCCATGG
TAAATATGCTCATGAGGAAACTGTTGCGACTGCATCCTTTGCTGGGAAATACATCATTGTGAAGAACATGGCAGAGGCAACTTATGTCTG
TGATTATATTCTTGGAGGTAAACTTGATGGTTCTAGCTCAACCAAAGAGGCATTTATGCAGAAATTTAAATATGCAGTTTCTGAAGGGTT
TGATCCGGATGTTGACCTTGTAAAAGCTGGTATTGCAAACCAAACAACTATGTTGAAGGGAGAAACAGAAGATATTGGGAAGTTGGTCGA
GAGGACCATGATGCAAAAATATGGGGTGGAAAATGTTAACAACCACTTCGTAAGTTTCAACACTATATGCGATGCCACACAAGAGCGTCA
AGATGCAATGTATAAGCTGGTTGAGCAAAAGCTGGATCTTATGTTAGTGATTGGTGGCTGGAACTCAAGTAACACTTCACATCTACAGGA
GATTGCAGAGGAACGTGGAATTCCCTCATACTGGATTGACAGTGAACAGAGAGTAGGTCCTGGAAACAAAATAAGTTACAAGTTAATGCA
TGGTGAGTTGGTTGAGAAAGAGAACTTCTTACCGGAGGGTCCTATTACAGTTGGGGTGACATCTGGTGCATCCACCCCCGATAAGGTTGT
TGAAGATGTCCTTATCAAGGTGTTTGATATCAAGCGCGAGGAAGCCTTACAATTGGCCTAAACAAGATTGGAACTCTTTTAAGATAATAG
GAGTGCTGCAATTTGGTTCCACCCCCCAAAAAAACTGTAGGCTATGCTGTATGTGCTAGCTCAACTATGCTAAATAACATGTTCTTGTAG
ATGTACAACTCAGTTTTTATAATATTATTATAAATATGCCGCTGTCCAGCTCTCAAACCTTGCCAGAATCAATGTCAATTTGCCAGTGAG
TCCGATACAGT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Solyc01g109300	Solyc01g109300

Genomic locations (0)

None

Library representation (29)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	5
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	3
Solanum lycopersicum	LeCAD	Seedling Two-week-old seedings	428	1
Solanum lycopersicum	LeMiToLf01	leaf	30679	5
Solanum lycopersicum	LePU	Pericarp Turning stage of fruit ripening.	1542	1
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	19
Solanum lycopersicum	LeWCAD	Seedling Two-week-old seedings	227	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	8
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	9
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	12
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	6
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	4
Solanum lycopersicum	cLES	leaf 4 weeks	5243	5
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	6
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	3
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	5
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (115)

Alignment image suppressed for unigene with 115 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 1 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (2)

Unigene	Build
SGN-U313338	Tomato 200607 #1
SGN-U334289	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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