Sol Genomics Network

Unigene SGN-U578421

Unigene Basic Information

Unigene ID:	SGN-U578421
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1769 bp

>SGN-U578421 Tomato 200607 #2 (107 members)
TCTGCCCCAACAATACAGGAAAAAAAAATAATATCGACCAATCATGGCAGCTCACAGCTCAACTCTCACCATATCCATACTTCTCATGCT
CATCTTCTCCACCTTATCCTCTGCTTCCGATATGTCAATTATTAGCTACGACGAGACACATATTCACCGTCGTACCGACGATGAAGTCTC
GGCGTTGTACGAGTCCTGGCTAATCGAGCACGGAAAATCGTACAACGCCTTAGGAGAAAAGGATAAGAGATTTCAGATCTTCAAGGATAA
CTTGAGATACATAGACGAACAGAACTCTGTTCCGAATCAGAGTTATAAGCTCGGATTGACGAAATTCGCCGATCTGACTAATGAGGAGTA
CAGGTCGATTTACTTGGGAACGAAGAGTTCCGGTGACCGGAAAAAGTTATCGAAGAACAAAAGTGATCGGTATCTTCCTAAAGTTGGGGA
TAGCTTGCCGGAATCAATTGACTGGAGAGAAAAAGGTGTGCTTGTTGGTGTCAAGGATCAAGGAAGCTGTGGGAGTTGTTGGGCATTCTC
TGCTGTTGCTGCCATGGAATCAATAAACGCGATAGTCACTGGGAATTTGATATCACTATCAGAGCAAGAGTTGGTGGATTGTGATAGGTC
GTACAATGAAGGTTGCGATGGTGGTCTTATGGACTACGCCTTTGAATTCGTCATTAAGAATGGAGGAATCGACACTGAAGAAGACTACCC
TTACAAAGAACGCAATGGCGTATGTGATCAATATAGGAAAAATGCCAAGGTTGTTAAAATAGATAGCTATGAAGATGTTCCTGTTAATAA
CGAAAAGGCGTTGCAAAAGGCTGTTGCACATCAACCTGTGAGCATTGCACTTGAAGCTGGTGGCAGAGACTTCCAGCACTACAAATCTGG
TATCTTCACTGGAAAATGTGGTACTGCAGTGGATCATGGTGTAGTTATTGCTGGATATGGTACTGAGAATGGCATGGATTATTGGATCGT
TAGGAACTCATGGGGAGCTAACTGGGGAGAGAACGGCTACCTCAGAGTCCAGCGTAACGTTGCCAGCTCTAGTGGCTTGTGTGGTTTAGC
CATAGAGCCTTCATATCCAGTAAAAACAGGACCAAATCCTCCTAAACCCGCTCCATCTCCTCCATCTCCGGTCAAGCCACCTACAGAGTG
TGATGAATATTCTCAATGCGCTGTCGGCACCACTTGCTGCTGTATCCTTCAGTTCCGTAGGTCTTGCTTCTCTTGGGGATGCTGCCCACT
TGAAGGAGCCACTTGCTGTGAAGACCACTACAGTTGCTGCCCACACGACTATCCTATCTGCAATGTTCGTCAAGGAACATGCTCAATGAG
CAAGGGCAACCCACTGGGAGTGAAGGCAATGAAGCGCATTCTTGCACAACCTATTGGGGCCTTCGGAAATGGAGGAAAGAAGAGCAGTTC
TTGAATTCTACAAGCACCAATACTGCGGAATGGGGTGAAAAAGCAGGGACAACAGAGGACGTGAATCGATACATTGATTAACAAAACCTC
ATTTTTCCAGCAGAAAGGTGTAGAAACAGATGAATGCATTATCAAGATTACAAGATGTTGATTAATGATTTGTATATATTGGATTATTGT
TCAACTTTGTCTAATTATTCAGTACATATTCCTTGTTTCTTATTATGAAGACTCCAAGTAATGCTTTTTAGTCTTCCATCTGTACTTGGT
TTCAACATTAATTAAAAAAAAGGACTATCTTCTGTACCTTTCATTTAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
c14	cysteine protease CYP1	cysteine-type endopeptidase activity

Genomic locations (0)

None

Library representation (31)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	LeMiToFr02	fruit	18697	2
Solanum lycopersicum	LeMiToLf01	leaf	30679	9
Solanum lycopersicum	LeTransC5	Root 1.5-month old plants	561	1
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	2
Solanum lycopersicum	Sl_LeafInf01	Developmental stage	125	1
Solanum lycopersicum	Sl_RootInf01	root and collar Three weeks old	385	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	9
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	5
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	6
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	7
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	4
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	3
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	6
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	4
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	9
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	vSlycmRNA		8362	5
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	8
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (107)

Alignment image suppressed for unigene with 107 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (10)

Annotations (manual: 3 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (1)

Unigene	Build
SGN-U313086	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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