Sol Genomics Network

Unigene SGN-U578018

Unigene Basic Information

Unigene ID:	SGN-U578018
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1761 bp

>SGN-U578018 Tomato 200607 #2 (149 members)
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGTATTTTCCATCTCACACAATAGTGGCCATGGCTACTCGACGAATGAAAAGCCCTAG
CTCTCTCCATCTCGTTGCTGTGTTCTCTCTACTAGTAGTCGCCGCCGCCGCCGAAGTTTTCTTCCAGGAAAGCTTCAATGATGGTTGGGA
AAGCAGGTGGGTAAAATCTGAATGGAAGAAAGATGAAAACATGGCTGGAGAGTGGAATCACACCTCTGGGAAGTGGAATGGTGACGCCAA
TGACAAAGGTATTCAGACCAGTGAAGACTACAGGTTCTACGCCATTTCGGCTGAGTTCCCTGAATTTAGTAACAAGGGAAAGAACTTAGT
GTTCCAGTTCTCTGTTAAGCATGAGCAGAAGCTTGACTGTGGTGGTGGGTACATGAAGTTGCTTAGTGGAGACGTTGACCAAAAGAAATT
CGGTGGTGACACTCCCTACAGTATCATGTTTGGACCAGACATCTGTGGCTACAGTACCAAGAAAGTCCATGCTATTCTCACTTATAACGA
GACAAACCATTTGATCAAGAAGGAAGTCCCATGTGAGACTGATCAGCTGACCCATGTCTACACTTTCATCCTCCGTCCTGATGCCACATA
CAGTATTCTCATTGACAATGTGGAGAAACAGTCTGGTAGCTTGTACTCTGATTGGGACATTCTCCCACCAAAGAAGATCAAGGATCCAAG
TGCCAAGAAACCTGAAGATTGGGATGACAAGGAATTCATTGATGATCCCGAGGATAAGAAGCCAGAGGGCTATGATGACATTCCAGAGGA
GATAACTGATCCTGAAGCCAAGAAGCCAGAGGACTGGGATGATGAAGAAGATGGTGAATGGACAGCCCCAACCATCCCCAATCCAGAGTA
CAAGGGCCCATGGAAGGCAAAGAAAATCAAGAACCCCAACTACAAGGGAAAGTGGAAGGCTCCTATGATTGACAACCCAGACTTCAAGGA
TGACCCAGATCTATATGTTTTCCCAAAATTGAAGTATGTTGGAGTGGAGCTGTGGCAAGTGAAATCTGGAACTTTGTTTGACAATGTTGT
GATATGCGATGATCCAGAGTTTGCCAAGTCAATTGCAGAGGAAACATGGGGAAAGCAGAAAGATGCTGAAAAGGCTGCTTTTGAGGAAGC
AGAAAAGAAGAGAGAGGAGGAGGAATCAAAGAATGCTCCAGCTGAATCTGATGCCGATGAAGATGACGAGGCTGATGAGGCTGATTCAGA
TGATGCTGATGACAAGTCTGACTCCAAGGATGAGGACACACATGATGAACTGTAAGAGCCAAGCATTTTGATTCAACTGACAAAGAAGCT
TACTTGGCAGTTCCCGGAAGATTTCGTCCTCCCTCCCCCCCTTTTTTTTCCTTATTAGTGAATTAGTAGCCCCTTCCCAATTTTAGTGAA
AAGACAGAGATTGAGGGTGCATGAGGTCTTATATGGCTGATTGCTTTGATGTCATTGGGACTCGGCCGTTAGAAATACATGTTTGGTTTT
GAGTAGAATTTTAAACTAAATGGTGTTGAAATTACACTAGTTAATTTCTACCTAATTTTCTATTTAAATTGCTCCTTGTCTTCGATTATT
TACTGTTTGCTGCTGTATTTTATTGCTTGAAGTAAGTAAATCTGTTAATCG

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Solyc01g100380	Solyc01g100380

Genomic locations (0)

None

Library representation (35)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	10
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	4
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	LeMiToFr02	fruit	18697	1
Solanum lycopersicum	LeMiToLf01	leaf	30679	7
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	1
Solanum lycopersicum	Sl_LeafInf01	Developmental stage	125	1
Solanum lycopersicum	Sl_RootN	Roots 5 weeks	165	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	9
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	13
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	6
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	5
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	8
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	10
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	6
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	4
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	3
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	4
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	5
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	5
Solanum lycopersicum	cTOS	suspension cultures	8026	10
Solanum lycopersicum	cTSB	seed	1880	6
Solanum lycopersicum	cTSC	seed	2256	3
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	9

mRNA member sequences (149)

Alignment image suppressed for unigene with 149 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (6)

Annotations (manual: 3 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (2)

Unigene	Build
SGN-U312683	Tomato 200607 #1
SGN-U333828	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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