Sol Genomics Network

Unigene SGN-U568737

Unigene Basic Information

Unigene ID:	SGN-U568737
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1973 bp

>SGN-U568737 Tomato 200607 #2 (92 members)
ACGCTGGTTCGAGAACCCACTCTTTTTTCTTTTAAAATCCTTCTATTTCCACTCTGTTTTCCTTATTATAGCAAATTGCAGTGCTAACAT
AAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGAT
CCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGGAATTCTGATTAATGGTCAATTT
CCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGAAC
GGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTA
CAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTC
AGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGAC
TTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACA
GTCGATCAAGGGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACA
TTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACA
GCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGC
AGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAGGACA
AACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGC
TCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTAC
TTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAAT
TACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGGG
ATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTCGTGATGCAGTTTCACGTTGCACAACTCAGGTCTATCCCAAG
TCATGGACCGCGATATACATTGCATTGGACAATGTAGGAATGTGGAACCTGAGGACTGAATTCTGGGCACGACAGTACCTCGGTCAACAA
CTATACATGAGAGTTTACACAGACTCAACCTCATTGAGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAAT
CGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAG
AAGTAATGCCTTGTTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTT
GTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGTGCATTTTGAATTATCGTATGCACATTGGCAGAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Z94058	pectinesterase	pectinesterase

Genomic locations (0)

None

Library representation (26)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	8
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LeCAD	Seedling Two-week-old seedings	428	1
Solanum lycopersicum	LeMiToFr02	fruit	18697	3
Solanum lycopersicum	LeMiToLf01	leaf	30679	8
Solanum lycopersicum	LeWCAD	Seedling Two-week-old seedings	227	1
Solanum lycopersicum	Sl_LeafCherry01	epidermis	226	1
Solanum lycopersicum	Sl_RootSSH03	root	149	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	5
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	8
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	5
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	8
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	6
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	6
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	4

mRNA member sequences (92)

Alignment image suppressed for unigene with 92 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (5)

Annotations (manual: 2 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (1)

Unigene	Build
SGN-U313648	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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