Sol Genomics Network

Unigene SGN-U580030

Unigene Basic Information

Unigene ID:	SGN-U580030
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1584 bp

>SGN-U580030 Tomato 200607 #2 (241 members)
TCATCACTCAGCTCTACACTTGTCACTCCCCTATATATATCCTTCTTCTTCCCCTTCCATTTCCACACTCAAAACTCAAAACACAATCTT
CTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACA
CACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCA
TGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGA
GGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCA
GCAAGAACCCTAATGTTCAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTA
TGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTG
CCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGA
AGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGG
AGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACA
GTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCA
CAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACC
TCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATG
AAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGG
TTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTG
ATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGT
ACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAGATGTTTTTGCACTAATGGCCTTTTGAGG
ATTAAAAAACGCTTCCATTAGGACTCAACAACAATCTTCTTGGATGGATCCTTT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Solyc07g064160	Solyc07g064160

Genomic locations (0)

None

Library representation (30)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	3
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	12
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	9
Solanum lycopersicum	LA	Leaf Mature leaves	6589	4
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	8
Solanum lycopersicum	LE15	Fruit 15 days post anthesis	269	1
Solanum lycopersicum	LeMiToFr02	fruit	18697	4
Solanum lycopersicum	LeMiToLf01	leaf	30679	5
Solanum lycopersicum	LeTransC6	leaf 1.5-month old plants	150	2
Solanum lycopersicum	SSH_3DPA	flower 3 days after Anthesis	252	1
Solanum lycopersicum	Sl_LeafInf01	Developmental stage	125	6
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	21
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	9
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	25
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	67
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	12
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	11
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	5
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	3
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	10
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	4
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	6
Solanum lycopersicum	cTSC	seed	2256	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (241)

Alignment image suppressed for unigene with 241 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (22)

Annotations (manual: 4 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (2)

Unigene	Build
SGN-U312660	Tomato 200607 #1
SGN-U333804	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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