Sol Genomics Network

Unigene SGN-U584601

Unigene Basic Information

Unigene ID:	SGN-U584601
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 2730 bp

>SGN-U584601 Tomato 200607 #2 (104 members)
ACCTCACAAAATTTTCATTTATCTTTTCTCTCTATTTTTTTCTTTATTTTTATTGGCCGGAGCTCCGGTGGTCTGCCGGTCGGAGTTTAT
TTTTGTCGGCAAAGATGGGAGTGACTATTTTAACAGATCTCGGAATGGAGATTTTGATTCCGGTATGTGCCGTTGTCGGCATAGCTTTCT
CGCTCTTCCAGTGGTATCTCGTCTCCAAAGTTACGGTCGGTACTGATAAGTCTCATTCATCCGGCGACGATAAGAATGGATATGCTGAAT
CTCTCATTGAAGAAGAAGAAGGCATCAATGACCATAACGTTGTTCAAAAATGCGCTGAAATTCAAAACGCTATCTCTGAAGGAGCAACCT
CATTTCTCTTTACGATGTACCAGTATGTTGGTGTTTTCATGGTTGCTTTCGCAATTTTGATCTTCGTTTTCCTCGGCTCTGTTGAGGGAT
TCAGCACGAAGAACCAGCCGTGCACATATGACAGCACCAAAACTTGCAAGCCAGCTCTTGCAACTGCTGTCTTCAGCACTGTATCATTTC
TGCTTGGTGCTGTTACCTCTGTGGTGTCCGGGTTCCTTGGAATGAAAATTGCCACATATGCAAATGCCCGAACTACCTTGGAGGCTAGAA
AAGGTGTTGGGAAGGCTTTTATTGTTGCATTTAGATCTGGTGCTGTGATGGGTTTCCTTCTTGCTGCAAATGGTCTTTTGGTTTTATTTA
TAACCATCCTTCTATTTAAGATGTACTACGGTGATGACTGGGAAGGTCTATTTGAGGCTATAACTGGTTATGGTCTTGGTGGATCTTCAA
TGGCCCTCTTTGGTAGAGTTGGTGGAGGTATTTATACCAAAGCAGCAGATGTTGGAGCTGATCTTGTGGGCAAGGTGGAGAGGAACATTC
CTGAAGATGATCCTAGAAACCCAGCGGTGATTGCTGACAATGTTGGAGACAATGTCGGAGATATTGCTGGTATGGGATCAGATCTTTTTG
GATCTTATGCAGAGTCATCCTGTGCAGCTCTTGTTGTTGCTTCAATCTCATCCTTTGGTGTCAATCATGAGCTTACTGCTATGCTATATC
CCCTTCTCGTCAGCTCTGTCGGCATCCTTGTGTGTTTGCTTACCACCTTATTTGCAACTGATTTCTTTGAAGTCAAGGCTGTTAAGGAAA
TTGAGCCAGCATTGAAGAAGCAACTCATTATCTCAACCATTCTCATGACTATTGGAATTGCTTTTGTTAGTTGGATTGCCCTTCCATCGA
CCTTCACAATATTCAATTTTGGAGTTCAGAAAGAAGTAAAGAACTGGCAATTGTTCTTGTGTGTTGGAGTTGGTTTGTGGGCTGGACTCA
TTATTGGGTTTGTCACTGAGTACTATACCAGCAATGCCTACAGCCCCGTCCAAGATGTTGCTGATTCATGCCGCACTGGTGCTGCCACCA
ATGTCATCTTTGGCCTTGCCTTGGGTTACAAATCCGTCATCATTCCCATTTTTGCCATTGCAATCAGTATATTTGTTAGCTTCAGCTTTG
CTGCAATGTACGGCATTGCAGTTGCTGCCCTTGGAATGCTGAGCACTATAGCCACTGGTTTGGCAATTGATGCATATGGTCCCATTAGTG
ATAATGCAGGAGGTATTGCTGAGATGGCTGGAATGAGCCACAGAATCAGAGAGAGAACCGATGCACTTGATGCTGCAGGAAACACCACTG
CTGCTATTGGAAAGGGATTTGCTATTGGTTCTGCTGCACTTGTGTCTCTTGCCCTCTTTGGGGCGTTTGTCAGCCGGGCAGCAATTTCCA
CTGTAGATGTCTTGACTCCTAAAGTCTTTATTGGTCTGCTAGTCGGTGCAATGCTTCCTTATTGGTTCTCCGCCATGACAATGAAGAGTG
TTGGAAGTGCTGCTCTTAAGATGGTTGAGGAAGTGCGTAGGCAATTCAACACCATCCCTGGTCTCATGGAAGGAACTGCCAAGCCTGACT
ATGCCACCTGTGTCAAGATCTCCACAGATGCATCGATCAAGGAGATGATTCCACCTGGTGCCCTCGTCATGCTCACTCCATTGATTGTTG
GTATCTTGTTTGGCGTCGAAACACTTTCTGGTGTTCTTGCAGGATCTCTCGTCTCTGGTGTACAGATTGCCATTTCTGCATCCAACACTG
GTGGTGCCTGGGACAACGCTAAGAAGTACATCGAGGCTGGAGCCTCAGAACATGCTAGGACTCTTGGCCCCAAGGGATCTGATGCACACA
AAGCTGCTGTAATTGGTGACACTGTTGGTGACCCTCTCAAGGACACATCTGGACCATCATTGAACATTCTTATCAAGCTGATGGCTGTCG
AGTCCCTCGTGTTTGCTCCCTTCTTTGCCACGCACGGTGGTCTTCTCTTCAAGTTATTTTAATGCAACCAACTCCTATGACTGTATGATG
AATCTCTATTATTCCTCTTCTCTTCCCATTCAAACTTCCGTTTCAATCATTTTTCGTGTTTTTAGTATCTAGAATGTTGGGATTAGCATA
TGGTGTTAGGTTGTGATGATGATGGTAAGGGTGAAGTGATTTTGCAGAGTTCAGAAGAAACATCAAATGTTCTTTCCTAGAGTAATTGTA
TCAGTTTTTTCTCTCCTCTTAATACCTTCTTGTCATTGCCCTTTTTGGGTATTCAATTTTTCAAGACTTCTTTATCTGCATTTCTCTTTT
CTGTCTCCATACATAAAACTGACATTTTCA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
vp1d1	vacuolar-type H+-pyrophosphatase

Genomic locations (0)

None

Library representation (30)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	6
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	4
Solanum lycopersicum	LE15	Fruit 15 days post anthesis	269	1
Solanum lycopersicum	Le2TR	roots 1-,2-,3-, and 4- month-old	1179	2
Solanum lycopersicum	LeMiToFr02	fruit	18697	13
Solanum lycopersicum	LeMiToLf01	leaf	30679	8
Solanum lycopersicum	LePS	root 5 weeks old plants	823	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	19
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	6
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	6
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	cTSB	seed	1880	4
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum pimpinellifolium	vSpimpmRNA		8	1

mRNA member sequences (104)

Alignment image suppressed for unigene with 104 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (18)

Annotations (manual: 10 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (4)

Unigene	Build
SGN-U313425	Tomato 200607 #1
SGN-U313426	Tomato 200607 #1
SGN-U313427	Tomato 200607 #1
SGN-U334341	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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