Sol Genomics Network

Unigene SGN-U564000

Unigene Basic Information

Unigene ID:	SGN-U564000
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1652 bp

>SGN-U564000 Tomato 200607 #2 (114 members)
CTCATTACCACTAGAAATATCACTCTCTTTCCCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATT
CCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGT
TCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTT
GAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGAT
AGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGT
CATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGATTCCAG
GTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATG
CTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAG
AATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTTTGGTGAC
TTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCT
GTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTA
ACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCT
GCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGG
ATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATT
CAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGAT
GAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAA
GAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGC
CAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCTA
TATGAATATACTGTATTACAGTAGCTTTCTGT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
tub	beta-tubulin

Genomic locations (0)

None

Library representation (31)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	7
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	15
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	3
Solanum lycopersicum	LA	Leaf Mature leaves	6589	6
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	LeMiToFr02	fruit	18697	7
Solanum lycopersicum	LeMiToLf01	leaf	30679	12
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	4
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	5
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	6
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	3
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	4
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	3
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	5
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	6
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	vSlycmRNA		8362	3
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (114)

Alignment image suppressed for unigene with 114 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 1 | blast: 3 | go: 7 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (1)

Unigene	Build
SGN-U312314	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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