Sol Genomics Network

Unigene SGN-U580674

Unigene Basic Information

Unigene ID:	SGN-U580674
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 2540 bp

>SGN-U580674 Tomato 200607 #2 (132 members)
ACGTGTAAAAATAAATATCTTAATATAATAAACATAAATTATAAATTCATAAAGAACTACATAGACCCATACCTCAACAAAGGATATTGT
AGTTGAGAAAATGAAAAAAAGAACAAGATATTGTGATTTTTGGTTGATTCAGCTATATGTTATTGATCCATGCCCTCAAAATTCAACTTT
TTAGAGGGACAAATGCCAATACACCGATTCATTAAAAGATACACATAGATTTAAAAAGGGAAGTCCCAAAAAATGAAATTAAAATTTCAA
AGGAAAAATTTACCTATCTACATGGATGCAGGGGGAGAGAAGCATAATGTTGGCTCATATTTGTACAAAGAAAAGTAAAAATATTTAGTA
AACTTCAACATTCCATTGCTCTGCCTTCTTCAATTGCTTCTTGGCGAAATTTCCACGGCGCTTCTCTTTACCGTTTCGTCTCTCTACTTG
TATATTAGGTACGGCAAATTTTCCGAAATTCTCCATGGTGCTTCTCTTTACCGTTTCGTCTCTCTACTTGTATATTAGTTTTTGCGAGAA
TCGGTGCAGCTTTTTAGGCGTTGACCGGTTTGGATTATCTTCGGATTTGAACTATCCGATTATCAGTTTATCTTATATTGAAATGAGTCT
ACAACAGGAATCACACCGTCCTCATCATCGATTTGGAAATCCGTTTAAAATGATTTTATCACCCAAGGGCTCATATTTGTCTCCTAAACT
TCTTGCTCTGTTAAATTCATTTGAGCAGACATTAGCAGGGAGACTTAAGAGTCTTAAGCCTGGAGGCAAGGAAGATATCCTTAGCCTTTC
ATGGATGACTCAAGCAATAAGCACACTTTGTGCAGTCCATACAGATGTGAAAACTCTTATTACTGATCTCGAGCTTCCTGTATCTGACTG
GGAAGAGAAGTGGATTGGTGTCTACTTGGACAATAGTTTGAAGATGCTGGATATGTGCGTAGCCTACAGCTCTGAGATTTCCAGGCTTAG
CCAAGGTCACCTTTATCTTCAGTGCAGCTTGCACAAGCTAGATGGCTCTTCAACACAGTTCATGAAGGCTCGTTCTTCATTGGATGGATG
GAAGCAGCACATTAATGCAAAGAACCATAGACTGGAGAATTGCTTTGCCATCTTGGACAGTCTCACTGATTCACTGAACCTACCCAAGAT
TAAGAATTCTGCTAAAGGGAAGGTTCTGATGCATGCAATGTATGGAGTGAGGGTTGCAACTGTTTTCATATGTAGCATCTTTGCTGTTGC
ATTCTCGGGTTCTGCAGCGAAATTGAAGGATCTGCAGGTTCTTGAGAGTTGCTTGTGGACAGAAGCTTTTGTTGATCTTCGTGATTTTGT
TAGTGGTGAGATCAGGGGCATATATTCTGTAGGGAAATTCACAGCACTGAAGGAGCTTGAAGCATTGGATGTTAGTGTGAAGAAGATATA
CCCAATCATTCAGGATGGAGTAGATTCTATTGACGCGGCACAGTTGGAACTTCTAACTTCAGATCTGACTCAAAAAAATGAAAAATTTTC
AGTAGGACTAGATCTCCTAGCAAAGGAGACAGATAAGTTCTTTCAAATACTTCTAACTGGACGCGATGTGTTGCTTTGTAACCTTAGAGT
TGGTAGTGCAACCGTTAAACCAGCCCAACCAAACAACAATGTACATAAACAAATGGTGAAGTGATGGTTAAGAAAGCGAGCATCTTTTGT
GTTTACACAAGTGTGCGTGTGTCAATGCAGAGTTTTGTGCTTTCTGGTTAAATATGTACTGCTAAGATGTGCAATATATAACATTTGTTG
TGATAAAGGCTGTGTAATTTATAGTAGTGAAGGTTGTGTATTGTTGCCATATAGGTGTTTTACAACGATCCATATATATCTGTACCCCTT
TACTATATCAACGATGTATAAAAGAAGTTCAATGAGAAGTTGCCATCCCTGCTATCAGATCAAGTTATAATTTTTCTGCTCCATCTTTTG
TTTACTAGCAGAACTGGGAACTAAATCTGTTTTTGTGTTTCAACTTGAAATGACATTGGGAAAGGGTTACTGTCATGTTTTTAGGTCTAA
GGATAACTGTGGTATGGAGAAAATTTTCTGTCATTTGATTAAACAAGTGGGTTGTTGGACAAACGTTTTCCCAACGTCAAAGACAGCTAA
TTCCAACGTGGTAGACGATAAAACAATGGGAAGAATAATACTAGTGGGTCTGTGGGTGGCTTACATTTTCTTGAAGAAAAATGGTCAGAG
ATGGCACAAAGAGCGGGGAATTGACTAGCTTCCAACTCCATTCACATCAAATACACTCGAACTATGACATGTTTCAGATTACGTAGATAA
ATTAACTTTTTAAAATATGTAATTTTTTTTTAATTATTGATATCAACCTTAAGCTAGAGGTTTTATGACTTATTGATACTCTTCTCTTTT
GGTAGGTGGATTGAGAAGTTTTACTTAACTTTGGTGTATTATAATTACTTGTCGTGGGAAATAGATTAGTAAAACTCAAACACGCTAACC
GCTGGCTTATACCAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (30)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	10
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LeCAD	Seedling Two-week-old seedings	428	2
Solanum lycopersicum	LeMiToFr02	fruit	18697	8
Solanum lycopersicum	LeMiToLf01	leaf	30679	19
Solanum lycopersicum	LePS	root 5 weeks old plants	823	2
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	4
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	5
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	7
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	14
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	5
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	6
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	6
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	3
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	3
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	4
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	5
Solanum lycopersicum	cTOS	suspension cultures	8026	9
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (132)

Alignment image suppressed for unigene with 132 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (2)

Unigene	Build
SGN-U314956	Tomato 200607 #1
SGN-U314958	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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