Sol Genomics Network

Unigene SGN-U268870

Unigene Basic Information

Unigene ID:	SGN-U268870
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268870
mRNA sequence:	Length: 1580 bp

>SGN-U268870 Solanum tuberosum #4 (63 members)
GTGGATCCCCGGCTGCAGAATCGGCACGAGGACTGGCCTCACTACTCTTTTGGCCATAGTAGCAAGACACTTATTTTAGTATACTACATT
TCAAATTTAAACTATAATGGCCTTTTCTGCTGGAAAATCTTATGCATTTTCAACAAATTTTGATCCCTTGCAACAAAATTTATGGGGTTC
TAAGCCTCCTATTTCATCATTATCCATCAAAGATATCGACTTCAAACAATGTGATAAGCATAACATCTTGTCTAAAAAACCTCTATACAT
TTCAGCAGTACTAAGTGGATTTGGACATGCTGATGAATCAAAAGAGTTCAAATCTAGGGACCCTTTAGTCCAATGCAATGCATATGAAGC
TAGTCAACCACAATCGATACCAATCGACATTGAGTTTGGCCAAGAAGCTCAGGCTGCTGCTACTCAGAAGCTCAAGATTGGACTCTATTT
TGCAACATGGTGGGCTTTGAATGTTGTTTTCAATATTTACAACAAGAAGGTTTTGAATGCATTTCCATTTCCATGGCTTACTTCTACTCT
TTCTCTGGCTGCTGGCTCTCTTATGATGTTGGTTTCTTGGGCTACTAAGATTGCTGAAACTCCAAAGACTGACTTTGATTTTTGGAAAGC
CTTGTTTCCTGTTGCTGTGGCTCACACAATTGGTCATGTGGCTGCAACAGTGAGCATGTCAAAAGTTGCTGTTTCATTCACTCATATTAT
TAAGAGTGGAGAGCCTGCTTTTAGTGTTTTGGTTTCAAGATTGTTAGGTGAAACTTTCCCATTGCCAGTGTACCTTTCACTTTTGCCAAT
TATTGGTGGTTGTGGACTTGCTGCTATTACTGAACTCAACTTCAATCTAATAGGTTTTATGGGGGCAATGATATCAAACTTGGCATTTGT
ATTCAGAAACATATTTTCAAAGAAAGGCATGAAGGGGAAATCAGTTGGAGGGATGAATTACTATGCTTGTTTATCAATGATGTCTCTATT
GATTCTGATTCCCTTTGCTATTGCTGTGGAGGGTCCACAAGTATGGGCACTTGGATGGCAGAATGCAGTCTCCCAAATTGGCCCAAATTT
TATATGGTGGGTGGTGGCTCAAAGTGTGTTCTATCACTTGTACAATCAAGTCTCCTACATGTCCCTAAATGAGATCTCCCCATTGACATT
TAGTATTGGTAACACTATGAAGAGAATTTCTGTCATAGTCTCATCCATCATCATCTTTCAAATTCCAATTCAACCAATCAATGCCCTTGG
TGCTGCTATTGCAATCTTGGGAACTTTCCTCTACTCTCAGGCTAAACAGTAAACACTTGTTATAGATGAGATATTATCATGTTATCAATT
TGTGACTACTAGTAGTATTGTTTTTTCCCCTAGCAAATGACTGGAGATGGATGTGGAAAATGGGCAGTCTCGGTGAATGAAGGTGCCTTT
TGAGTAATTGAAATGTTAACAAAACCAAAAAAATAAAATTGGCCCTTCCTAGCTGCAATTCCCATCCAAGAATTTGTAATGACCTTTATG
TTGTGAATTAATATGACTATATAGTATGCCTTTGTGTGATAAATAAAAAA

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
AY163867	glucose-6-phosphate/phosphate translocator 2	glucose-6-phosphate/phosphate translocator
gpt	glucose-6-phosphate/phosphate-translocator precursor	glucose-6-phosphate/phosphate-translocator

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	CSCH	Tubers	5038	7
Solanum tuberosum	STM	mixed tissues	14805	7
Solanum tuberosum	STOL	Stolon	6462	2
Solanum tuberosum	SWST	Stolon	5942	13
Solanum tuberosum	TBSK	Tuber Skin	4812	5
Solanum tuberosum	TUBS	Tubers	5976	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	12
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	11
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (63)

Alignment image suppressed for unigene with 63 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	85	DUF6	149
2	22223	UDPgal_transpt Tpt_PEP_transl	43
5	57100	UDPgal_transpt Tpt_PEP_transl	17
1.1	101458	Protein of unknown function DUF250	134
2	118605	Protein of unknown function DUF250	44
5	129665	Protein of unknown function DUF250	17

Preceding Unigenes (1)

Unigene	Build
SGN-U243717	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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