Sol Genomics Network

Unigene SGN-U269130

Unigene Basic Information

Unigene ID:	SGN-U269130
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269130
mRNA sequence:	Length: 1987 bp

>SGN-U269130 Solanum tuberosum #4 (34 members)
TTTTGGTTTGTCCAAAAACCCTTCAAAGGCCATCGACTTCTCTTGCAGCCATCGATACACTCTCAATTCTATACTGCAAGTCCAGATTAT
AAAAGATGGTGCAGTACAATTTTAAGAAGATTACAGTGGTTCCCAATGGGAAGGACTTTGTCGATATCATTCTGTCTCGCACCCAGCGTC
AAACTCCTACTGTTGTGCACAAAGGATATGCTATCTCTCGTATACGTCAATTTTACATGCGCAAAGTGAAATATACGCAGCAGAATTTCT
ATGACAAACTCTCCACCATTATTGATGAGTTCCCCAGGCTTGATGATATCCATCCTTTCTATGGGGACCTTCTTCATGTGCTCTACAACA
AAGACCATTACAAGCTTGCCCTTGGCCAAATTAATACTGCTAGAAATTTGATTTCTAAAGTAGCAAAGGATTATGTCAAATTGTTGAAAT
ATGGTGACTCACTCTATCGCTGCAAGTCCCTGAAAGTTGCAGCTCTTGGGCGTATGTGCACTGTTATAAAGCGCATTGGCCCAAGTTTAG
CTTATTTGGAACAGATTAGGCAGCACATGGCAAGACTTCCCTCAATTGATCCCAATACTCGAACCATCTTGATTTGTGGGTATCCAAATG
TTGGCAAGAGTTCATTCATCAACAAGATTACAAGAGCAGATGTGGATGTTCAACCGTATGCCTTCACTACAAAGTCCTTGTTTGTTGGTC
ATACTGACTACAAATATCTGAGGTATCAAGTGATCGACACTCCAGGGATCTTGGATAGGCCATTCGAGGATCGTAATATCATAGAAATGT
GCAGTATTACAGCTCTAGCACATCTGAGGGCCGCTGTGTTATTTTTCCTTGATATTTCTGGTTCTTGTGGCTATAGCATTGCGCAACAGG
CCGCTCTTTTTCACAGCATCAAATCACTCTTTATGAACAAGCCGTTGATGATTGTATGCAACAAAACAGACTTGCAGCCATTAGAAGGGA
TTTCTGAGGAAGATAAGAAGTTAGTCGCTCAGATGAAAGATGAAGCTATGAAGACAGTGATTGGTCAAGGTGGCGAGGCAACAGATGAAG
CAGGTGTGCTGTTAACTATGAGCACTTTGACTGAAGATGGCGTAATTTCAGTGAAGAATGCAGCTTGTGAGAGGTTACTGAATCAAAGGG
TGGAATTGAAAATGAAATCGAAAAAGTTAAATGACTGCTTGAACCGCTTCCATGTTGCTATGCCAAAACAACGTGACCAGAAAGAGAGGC
CGGCATGCATACCTGAGGCAGTGTTGGAAGCCAGAGCGAAGCAGGCTGAGGCAGATGCTGAGAAACAGAAAAGGAAGCTCGAGAGAGATT
TGGAGAATGAGAATGGAGGTGCTGGTGTTTATTCTGCAAGCTTGAGGAAGCACTATCTATTAGCAAATGAAGAGTGGAAGGAAGATATAA
TGCCTGAAATTTTAGATGGGCACAATGTCTATGACTTTGTTGACCCTGATATCTTACAAAGGCTTGAAGAATTGGAGAGAGAAGAAGGTC
TTCGTCAGGAGGAAGAAGGAGATGATGATTTTGAGATGGACGGTGCAGAGCTGACCCCTGAAGAACAAGCAGCATTAGCTGAAATCCGGA
AAAAGAAAAGTTTGCTCATTCAACAGCATAGAATGAAGAAGAGCACCGCAGAGAGTCGACCCACTGTACCAAGAAAGTTTGATAAAGACA
AGGAGTTTACTTCAAAAAGAATGGGAAGACAGTTATCTGCTTTGGGATTGGATCCAACTCTAGCAATCAATCGAGCCCGAAGTAAGTCAA
GGGGTCGTAAGCGAGAGAGATCAGTTGAACGTGGAGATGACAATGGTAATGAAGCAATGGATGTTGACGAGATTACTCCCAGCAAGAAGC
AACGTAGATCTAGATCTCTTTCCATGGCAAGATCAAGGTCAATGTCACGACCTCGAAATGAATTTGTTCCAGGGGAGGGCTTCAAGGACA
AAACCCC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	6
Solanum tuberosum	ACDC	Sprouting Tubers	5177	3
Solanum tuberosum	CSCH	Tubers	5038	5
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	STOL	Stolon	6462	2
Solanum tuberosum	SWST	Stolon	5942	3
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3

mRNA member sequences (34)

Alignment image suppressed for unigene with 34 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 1 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	254	GTP1_OBG Small_GTP GTP-bindding_dom	62
2	23990	GTP1_OBG Cons_hypothATPbd Small_GTP ProtSyn_GTPbind MMR_HSR1 GTP-bindding_dom Cbl_N	10
5	58320	GTP1_OBG Cons_hypothATPbd Small_GTP ProtSyn_GTPbind MMR_HSR1 GTP-bindding_dom Cbl_N	9
1.1	101549	GTP1/OBG - Molecular Function: GTP binding (GO:0005525) GTP-binding protein HSR1-related - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622)	77
2	119762	Nucleolar GTP-binding 1 - Molecular Function: GTP binding (GO:0005525) GTP1/OBG - Molecular Function: GTP binding (GO:0005525) NOG C-terminal	12
5	130091	Nucleolar GTP-binding 1 - Molecular Function: GTP binding (GO:0005525) GTP1/OBG - Molecular Function: GTP binding (GO:0005525) NOG C-terminal	12

Preceding Unigenes (1)

Unigene	Build
SGN-U244303	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: