Sol Genomics Network

Unigene SGN-U269406

Unigene Basic Information

Unigene ID:	SGN-U269406
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269406
mRNA sequence:	Length: 1468 bp

>SGN-U269406 Solanum tuberosum #4 (36 members)
AAACAACCAAAGTTGTGTTCTATAAAAAGTTCTCATATTTAGTGATCAGTAAAAAAATCAAGAAAATGTCGACTACTGTAGGCCAAGTCA
TTCGTTGCAAAGCTGCTGTGGCATGGGAGGCTGGTAAGCCATTAGTGATGGAGGAAGTGGATGTTGCTCCTCCACAGAAAATGGAAGTTC
GTCTTAAGATCCTCTACACTTCACTCTGTCATACTGATGTATACTTCTGGGAAGCTAAGGGTCAAAATCCAGTCTTTCCTAGAATTCTTG
GACATGAAGCAGCAGGGATTGTGGAGAGTGTTGGAGAGGGAGTAACAGAACTTGCACCAGGAGACCATGTTCTTCCTGTCTTTACAGGAG
AATGCAAAGATTGTGCTCACTGTAAATCTGAAGAAAGCAATATGTGTAGCCTCTTAAGGATTAACACTGACAGGGGAGTGATGATTAATG
ATGGACAATCAAGGTTTTCCATCAATGGAAAGCCCATTTACCATTTTGTTGGGACCTCCACTTTTAGTGAGTACACTGTGGTTCATGTTG
GATGTGTCGCCAAAATTAACCCCCTTGCTCCTCTTGACAAAGTATGTGTCCTTAGTTGTGGAATCTCGACAGGCCTTGGAGCAACTTTGA
ATGTTGCTAAACCAACAAAAGGCTCAAGTGTGGCTATATTTGGACTAGGAGCTGTAGGCCTTGCAGCTGCAGAAGGAGCCAGAATTGCTG
GTGCTTCAAGGATAATTGGTGTTGATTTAAATGCTAGTAGATTTGAGCAAGCTAAGAAATTTGGTGTGACAGAGTTTGTGAACCCAAAGG
ACTATAGTAAACCAGTTCAAGAGGTAATTGCTGAGATGACTGATGGCGGAGTCGATAGGAGTGTGGAATGTACTGGCCATATTGATGCTA
TGATTTCAGCATTTGAATGTGTCCATGATGGCTGGGGAGTGGCTGTACTTGTTGGAGTACCCCATAAAGAAGCTGTGTTCAAGACACACC
CTATGAACTTATTGAATGAAAGGACTCTCAAAGGAACCTTCTTTGGAAACTACAAACCTCGTTCGGATATTCCTTCTGTTGTTGAGAAAT
ACATGAACAAAGAACTTGAATTGGAGAAATTCATCACTCATACACTTCCATTTGCTGAAATCAATAAGGCTTTTGATTTAATGTTGAAGG
GAGAAGGCCTTCGTTGCATCATCACCATGGAGGACTAAACTTACTGTCCTAGAAAAGGAGCTTCTAGCTAGTCGCTACTCTTTGAGAAAA
GACCAATAAATTGTCACTGTCTTATTTTCCCTTTCTTGTTTGGTGATTGAGTTGTAACATTCCTGTCCAACTCCATCCATGTCTTTTCTT
TTGTTTTTTTGCTTATAGATGTGCTTTGTGTTTCGCAATGCCATCCATGTCTATTTCTGTTCTTGTAAAAAAAATGCAATTATCTCTGTT
TTATCTCTAAGTATATTTACAGAATTTC

[Blast] [AA Translation]

Associated Loci (3)

Locus symbol	Locus name	Gene activity
adh2	alcohol dehydrogenase 2	alcohol dehydrogenase
adh1	alcohol dehydrogenase 1	alcohol dehydrogenase
adh3	alcohol dehydrogenase 3	alcohol dehydrogenase

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSCH	Tubers	5038	4
Solanum tuberosum	IVROOT	Root	5850	3
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	STOL	Stolon	6462	3
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	3
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	5
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	5
Solanum tuberosum	vSTmRNA		708	4

mRNA member sequences (36)

Alignment image suppressed for unigene with 36 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	100	Tdh Adh_zn_family	127
2	22103	Tdh Adh_zn_family	66
5	56360	Tdh ADH_zinc Adh_zn_family	60
1.1	101421	GroES-like Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491)	210
2	118545	Alcohol dehydrogenase GroES-like Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491) Alcohol dehydrogenase zinc-binding GroES-like	58
5	129056	Alcohol dehydrogenase GroES-like Alcohol dehydrogenase zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491) Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491) Alcohol dehydrogenase zinc-binding GroES-like	51

Preceding Unigenes (1)

Unigene	Build
SGN-U244128	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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