Sol Genomics Network

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Unigene SGN-U269563

Unigene Basic Information

Unigene ID:	SGN-U269563
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269563
mRNA sequence:	Length: 1593 bp

>SGN-U269563 Solanum tuberosum #4 (32 members)
ACAAACACAAGCCAGTAGTTGGTAGTAGTAGTGTGACCAATGCACTAATGCCAAAAATTCTTCCTCTTCACTGAGAATCACAGAAATGGC
TTCACTATTAGGAACTTCTTCAGCAGCAGCAGCAGCAATTTTAGCTTCTACACCCTTCTCTGCTCGTTCCTCTAAATCTGCTGTTTTATC
CCTTTTCCCATCTTCAGGACATAGCCAAGGGAGGAAGTTTTATGGAGGAATCAGACTCCCAGTTAAGAAAGGGAGGTCCCAATTCCATGT
GGCAATTTCCAATGTTGCAACTGAAATCAGCCCTGCTCAAGAACAGGCTCAGAAACTTGCTGAAGACAACCAGAGACCGGTGTATCCATT
TCCCGCCATAGTGGGGCAAGATGAGATGAAGTTGTGTCTTTTGCTGAATGTAATAGATCCAAAGATTGGAGGCGTGATGATTATGGGTGA
TAGAGGAACTGGGAAGTCCACCACGGTTAGGTCTTTGGTGGATTTACTTCCAGAAATAAAAGTTATTTCTGGTGATCCATTCAATTCAGA
TCCAGAGGACCAAGAAGTAATGAGCGCTGAAGTCCGTGACAAATTGAGGAAGGGAGAGCAGCTTCCTGTATCTCTCACCAAAATCAACAT
GGTTGATTTACCACTAGGTGCTACTGAGGACAGGGTGTGTGGGACAATCGACATTGAGAAAGCTCTTACCGAGGGTGTGAAGGCATTCGA
GCCTGGTCTTCTTGCTAAAGCTAACAGAGGAATACTTTATGTCGATGAGGTTAATCTTTTGGACGACCATTTGGTAGATGTTCTTTTGGA
TTCTGCAGCATCAGGATGGAATACTGTTGAAAGAGAGGGAATATCAATTTCACACCCTGCTCGATTTATCCTTATTGGTTCAGGTAATCC
TGAAGAAGGAGAACTTAGGCCACAGCTTCTTGATCGATTTGGAATGCATGCCCAAGTCGGGACTGTGAGAGATGCAGAACTGAGAGTGAA
GATCGTCGAGGAAAGAGGTCGTTTTGACAAGAACCCCAAGGAATTCCGGGAATCATACAAGGGGGAGCAAGAAAAGCTCCAGAGCCAAAT
CACCTCAGCCAGGAGCGGGCTTTCTTCTGTTACGATTGATCGTGATCTTCGTGTTAAAATCTCTAAGGTTTGTGCAGAACTGAATGTCGA
TGGATTGAGAGGTGATATAGTCACTAACAGAGCAGCAAAAGCATTGGCTGCACTTAAAGGAAGAGATAAGGTAACCCCAGAGGATATCGC
AACTGTCATTCCCAACTGCTTAAGACACAGACTTAGGAAGGATCCATTGGAATCTATCGACTCGGGTTTACTTGTTGTTGAGAAATTTTA
CGAGGTTTTCGGCTAAGGAGATAGAGGGCTTTCTTCTTTGGGTAACATTTGCCTGCACAAGCTGTTTTATAGAGCAACATACTTGTTTTT
GTCTTGATTTTCAAATTCTCAAATCATCTAAAGATTTGACAATTGTAAAAACTGAAGATTGTCTTTGTACTGTAACTAAACTTACTGGTA
ATTGATTATTATCAATCTCTGGTTATTAAAAAAAAAAAAAAAAAACTCGAGACAGTTCTCTCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	4
Solanum tuberosum	STM	mixed tissues	14805	6
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	3
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	11
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1

mRNA member sequences (32)

Alignment image suppressed for unigene with 32 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	987	Mg_chelatse_chII	19
2	23344	Mg_chelatse_chII AAA_ATPase_centr	13
5	57918	Mg_chelatse_chII AAA_ATPase_centr	10
1.1	102116	Magnesium chelatase ChlI subunit - Biological Process: photosynthesis (GO:0015979) - Biological Process: chlorophyll biosynthesis (GO:0015995) - Molecular Function: magnesium chelatase activity (GO:0016851) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	21
2	120041	Magnesium chelatase ATPase subunit I - Molecular Function: ATP binding (GO:0005524) - Biological Process: porphyrin biosynthesis (GO:0006779) - Molecular Function: magnesium chelatase activity (GO:0016851) Magnesium chelatase ChlI subunit - Biological Process: photosynthesis (GO:0015979) - Biological Process: chlorophyll biosynthesis (GO:0015995) - Molecular Function: magnesium chelatase activity (GO:0016851) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	11
5	131046	Magnesium chelatase ATPase subunit I - Molecular Function: ATP binding (GO:0005524) - Biological Process: porphyrin biosynthesis (GO:0006779) - Molecular Function: magnesium chelatase activity (GO:0016851) Magnesium chelatase ChlI subunit - Biological Process: photosynthesis (GO:0015979) - Biological Process: chlorophyll biosynthesis (GO:0015995) - Molecular Function: magnesium chelatase activity (GO:0016851) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	8

Preceding Unigenes (1)

Unigene	Build
SGN-U244114	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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