Sol Genomics Network

Unigene SGN-U269607

Unigene Basic Information

Unigene ID:	SGN-U269607
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269607
mRNA sequence:	Length: 1615 bp

>SGN-U269607 Solanum tuberosum #4 (20 members)
GAGAGAACTAGTCACTATTTTCTCTCCCTTCTCTCTCACTGCCAATGGAGTCTCGCGTGTTGACTGGTGGCGCCACCGCCATTCGCGGCG
GTCTCCCACTTCTCCGGAAGCCGGCGGCAGTGATGAAGTTCACCACTGCCGCCACATGCGGCATCAGCAGGGACTTCCCTGCTGGTGCTG
TTACGGCAAAACCAGTCGGACCTCTAATTGCCGGCCCCAATTTGATTTGGGGACGACAATTACGTCCGGCTATTCTTCTCGAAACTTCAC
CAAAAAGGGAATCCATTAAGCCGTGCTCCGCTGCGGCTTCTTCTTCCGCCGGAAGCAGCGATTCCTCCGGGGATGCTAAAGTCGGGTTTT
TCAACAAAGCTACTCTGACTACCGGGTTTTTCTTCTTCATGTGGTATTTTCTGAATGTGATATTCAATATCCTCAACAAGAAGATCTACA
ATTACTTTCCTTATCCTTATTTTGTTTCTGTTATACATTTGGCTGTTGGGGTGGTATATTGCTTGGTGAGCTGGGGTGTAGGTCTCCCAA
AAAGAGCTCCTATTGATTCAACACAACTGAAGCTGCTCACCCCTGTTGCCTTCTGTCATGCGCTTGGCCATGTTACCAGCAATGTCTCGT
TTGCTGCAGTTGCTGTCTCATTCACTCACACAGTCAAAGCTCTGGAGCCTTTCTTCAATGCAGCTGCGTCTCAGTTCATTCTTGGACAAC
AAATACCTTTAGCACTATGGCTGTCACTTGCTCCAGTTGTCCTTGGTGTGTCGATGGCTTCATTGACTGAGCTATCTTTCAATTGGTTGG
GCTTCACTAGTGCTATGATTTCTAACATCTCCTTCACATACAGGAGTATATACTCGAAGAAAGCTATGACTGATATGGATAGTACTAACG
TGTATGCCTACATATCCATCATTGCTCTTATCTTTTGCCTCCCGCCTGCCATTTTTATTGAGGGACCTCAATTGCTTCAACATGGATTCA
ACGATGCCATTGCTAAAGTTGGTCTAACAAAATTCGTAACAGATCTCTTTTGGGTGGGAATGTTTTATCACCTCTACAATCAGGTAGCCA
CAAACACCCTTGAGAGGGTGGCACCTCTTACACATGCGGTTGGAAATGTGTTGAAACGTGTGTTTGTGATTGGATTCTCAATTGTTATCT
TCGGTAACAAAATTTCAACACAAACTGGTATTGGAACCTGCATTGCAATTGCTGGAGTTGCAATCTACTCTTTCATTAAGGCCAAGATGG
AAGAAGAGAAAAGGCAAAAGAAAGCCGCCTGAAAATGAAGGAACGCGTATCAGGAAGAAGGTTGTGATGGACTCTGTGTTGATTTTTCAC
TATTTTTTCCTGTCCAAATAAAGATGAAGAAGGGAAATCTCTGCTTTTCTTGGAGTTCTGTAGTTTAGTTTGGAGTCAATTGTTTTGATT
CAAAGGTCAATTGCCTGCTAATTTCTGTATACTTGTGATTATTGTAATAATTATAATAATGTACCAACTTCTATATATTTCATTCCCAGA
CATCTTGAATTCATTACATCTAATATAGTTTGGTGTAAACATCGGATGTGTACATTTTTTTCATTCAAATCTCCTTTTTTTAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
tpt	triose phosphate translocator	triose phosphate translocator

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	3
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	STOL	Stolon	6462	3
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	5

mRNA member sequences (20)

Alignment image suppressed for unigene with 20 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	85	DUF6	149
2	22223	UDPgal_transpt Tpt_PEP_transl	43
5	57028	CO/AA/NH_transpt UDPgal_transpt DUF6 Tpt_PEP_transl	18
1.1	101458	Protein of unknown function DUF250	134
2	118605	Protein of unknown function DUF250	44
5	129845	Protein of unknown function DUF250 Tpt phosphate/phosphoenolpyruvate translocator - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: integral to membrane (GO:0016021)	15

Preceding Unigenes (2)

Unigene	Build
SGN-U244332	Solanum tuberosum #3
SGN-U259488	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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