Sol Genomics Network

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Unigene SGN-U269879

Unigene Basic Information

Unigene ID:	SGN-U269879
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269879
mRNA sequence:	Length: 1129 bp

>SGN-U269879 Solanum tuberosum #4 (23 members)
CTTATCCTCATTTACGTCCACTGTCGATCGGTTCTCCAATGGCGAAGCCAATCGTCGACACCGAGTACATCAAAGAAATCGAGAAAGCTC
GTCGAGACCTCCGCGCTCTCATCTCCAACAAAAACTGTGCTCCGATCATGCTTCGCTTAGCATGGCACGATGCAGGAACGTATGATGCTA
AATCAAAGACTGGTGGACCAAATGGTTCTATCAGAAATGAGGAAGAGTTCACTCATGGTGCTAATAATGGCTTGAAAATCGCTCTTGATT
TTTGCGAAGCAGTGAAGTCTAAACATCCAAAGATTACGTATGCAGATCTATACCAGCTTGCAGGTGTTGTTGCAGTCGAGGTGACTGGTG
GTCCGACTATTGAATTTGTCCCTGGTAGGAAGGATTCCAGTGTTTCTCCAAAGGAAGGGCGGTTACCAGATGCTAAACAAGGTGTGCCAC
ATCTTAAAGACGTATTTTATAGGATGGGTTTGTCTGACAAAGATATAGTGGCTCTATCAGGGGGTCATACACTGGGAAGGGCACATCCAG
AGAGATCAGGCTTTGATGGTCCATGGACAAAGGAGCCACTGAAATTTGACAATTCATATTTTGTGGAGCTGCTTAAGGGGGAAAGCGAGG
GATTACTGAAACTTCCCACAGACATTGCTTTATTGGATGATCCTGAGTTCAGACATTATGTTGAGCTGTATGCTAAGGATGAAGATGCCT
TCTTTAGGGATTACGCCATATCACACAAGAAACTATCTGAGCTAGGGTTTACCCCAAGTTCTGGTTCCAAGGCTATGGTGAGGGATGGCA
CTATTTTAGCACAGAGTGCTGTAGGTGTTGTTGTGGCTGCTGCAGTGGTGGCACTGAGTTATTGGTATGAAGTGCGGAAAAGGATGAAGT
AAATTGCAGCACGACTGCTTGCATTCTTAGCTACATATTCACAATCTCGTCCCGTTATTGATAAAGCGTACCTGTTATGGTTTTAGCACT
CTTCCCTCAAATAAAAACATGTAATGTCGACTAAATGGATTAATACAAAATTATAGTAAGGAATTGGTTGTACCCGTGTTTATATTTGAT
ACCCATACTTTTGGAAGGGTTTTGATTTCAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
AY742957	peroxisomal ascorbate peroxidase	peroxisomal ascorbate peroxidase
AY742959	cytosolic ascorbate peroxidase	cytosolic ascorbate peroxidase

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	3
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	6
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (23)

Alignment image suppressed for unigene with 23 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	23	Peroxidase	342
2	22141	Asc_perxdse	55
5	56478	Asc_perxdse	38
1.1	101394	Haem peroxidase plant/fungal/bacterial - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979) Haem peroxidase	328
2	118594	Plant ascorbate peroxidase - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979) Haem peroxidase Haem peroxidase plant/fungal/bacterial - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979)	46
5	129165	Plant ascorbate peroxidase - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979) Haem peroxidase Haem peroxidase plant/fungal/bacterial - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979)	34

Preceding Unigenes (1)

Unigene	Build
SGN-U244286	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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