Sol Genomics Network

Unigene SGN-U270086

Unigene Basic Information

Unigene ID:	SGN-U270086
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270086
mRNA sequence:	Length: 1496 bp

>SGN-U270086 Solanum tuberosum #4 (15 members)
CAAAAATCCACATTAGAAAACCCCTCTTCAGCCGAAATCAGAAACCCTAGTTTTCACAATAAATTGAAATCGGGGCGGTGCTGGAGAAGA
AGAAGAAGAACAAAGCAAGAGAATCATGGCGGAGCATTTGGCTTCTATATTTGGTACAGAGAAAGACAGGGTGAATTGCCCTTTCTACTT
TAAGATCGGTGCGTGTCGGCATGGTGACCGCTGTTCCAGGCTTCACACAAAGCCTAGCATCAGTCCGACCTTAGTTCTGTCTAACATGTA
CCAGCGTCCTGATATGATCACCCCTGGTGTTGACCCTCAAGGCCAGCCCCTTGACCCTCGCCAGATCCAGCGCCACTTCGAGGACTTCTA
TGAAGATTTGTTTGAAGAGCTTAGCAAGTATGGAGAGATTGAAAACCTTAACATCTGTGACAATTTAGCTGACCACATGGTTGGTAATGT
TTATGTCCAGTTCAGAGAGGAAGATCATGCTGCAAGTGCTCTTCAGAATCTTACAGGAAGATTTTATGCAGGACGTCCAATCATTGTTGA
CTTCTCCCCAGTGACTGATTTTCGGGAAGCCACGTGTAGGCAGTATGAGGAAAATGTATGTAACCGAGGCGGCTATTGCAACTTCATGCA
TCTGAAAAAGATAAGCAGGGAGTTGAGGCGGCAATTATTTGGGAAGAGTAGTAGGCGAAGGCGCAGCCATAGTAGAAGCCGAAGTCCGCG
TGGTAATCGCAATTATGAAGAGCCGCGCCCACAGGGAGGCCGTGGTTTTGGTAGAAGAGGAGGTGGAGGAGGTGGTGATCGCTACCATGA
TAGAGGTAGGAGGCCTAGAAGCAGAAGTCCTGGACGAAGGAGCGGACAGAGCAGAAGTCCTGGGGGTAGGAGAAATAGAAGTCCAAATAG
GGAAGGAAGTGAGGAGAGAAGAGCAAAGATTGATCAATGGAACAGAGAAAAGGAAGAGACAGGTTCTGGGAGGAATCATGGTGGTGGGAC
ACGTAGGGAAGACAGGGAAGGCAGTGCTGAGAGGAGGGCAAAGATTGATCAATGGAATAGGGAGAAAGAAGAGGCAGATTCTGCTAAATA
TGATAATTTTGATGCTGATAATGGCAGGAATGATGGTGGTGATCACTATGGAGAACAGTTTGATGATGATTACCCGAAGCAGCAGTAGGT
AGAAAATGGAAGTGAAGGCTGCTATAGTATTGTTACTCTGGTTAAAAGGTTCCTGCTTTGCAGTGGTCGTGCCTACCTTTACATAGCAGC
TTACAATGGTCTTGTATACAGGTTTTCTCTGCTGCAGACGAGTCCATGGGACTTTTAACATGCTAGGGATGACGAGAAGTGAAGGAACCA
AGTCCATGAACCTATGAAGTTCTTCTTTCCGTTTTGGAGTTTTACCATTTGTTAGGCATTGCAGGTTTATATCCTCAAAGACAATAGTGC
TGTGTATAACTGTACTGGTCGGTGACCTGTTGGGTTGAGGTTCATTTCAGTATTTA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (7)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TUBS	Tubers	5976	3
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	4
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3

mRNA member sequences (15)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 1 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	445	RNA_rec_mot	39
2	22592	U2_small Znf_CCCH	24
5	57976		10
1.1	101996	Zinc finger CCCH-type - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: zinc ion binding (GO:0008270) U2 auxiliary factor small subunit - Molecular Function: RNA binding (GO:0003723) - Cellular Component: nucleus (GO:0005634)	25
2	118983	U2 auxiliary factor small subunit - Molecular Function: RNA binding (GO:0003723) - Cellular Component: nucleus (GO:0005634) Zinc finger CCCH-type - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: zinc ion binding (GO:0008270)	23
5	129722	U2 auxiliary factor small subunit - Molecular Function: RNA binding (GO:0003723) - Cellular Component: nucleus (GO:0005634) Zinc finger CCCH-type - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: zinc ion binding (GO:0008270)	16

Preceding Unigenes (3)

Unigene	Build
SGN-U247020	Solanum tuberosum #3
SGN-U248948	Solanum tuberosum #3
SGN-U248949	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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