Sol Genomics Network

Unigene SGN-U270688

Unigene Basic Information

Unigene ID:	SGN-U270688
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270688
mRNA sequence:	Length: 1657 bp

>SGN-U270688 Solanum tuberosum #4 (17 members)
CACAATCCAAAATTCAATGTCACCTCCATCTCTTCCTCTATAAATTGTCTTACCCAATTTGTGAGTGATGAAGATTTACTGAATTTGAAG
ACCGAAAGAATCATAAAAACAGAATAGAGGAGTACTGGTATTTGGTTGATGGTCTCATGGGTGCAACGGGTTCCAAGCTCGAGAAAGCCC
TCGGAGACCAATTTCCCGAAGGTGAACGATACTTTGGTCTCGAAAATTTCGGCAACACTTGTTATTGCAACAGCGTCTTGCAGGCCTTAT
ACTTTTGTGTCCCCTTCCGCGAGCAACTGCTAGAGTATTATGCAAATAATAAAAGTCCTCCAGAAGCTGAGGAGAATCTCTTAACTTGTT
TGGCTGAATTGTTTTCACAGATAAGTTCACAGAAGAAGAAAACAGGTGTTATAGCTCCAAGGCGCTTTGTACAAAGAGTCAGGAAGCAAA
ATGAACTTTTCCGAGGTTACATGCATCAGGATGCCCATGAGTTTTTGAACTTCTTGTTGAATGAACTCGTTGATATCTTGGAGAAAGAGT
CACATGCAGCAAAAAGTTTAGCGGCAAGTTCTCCTGAAAAAGTCTCAAATGGAACATGTAATGGTCATGCGAATGGCGTTAAGAAGGAGC
CACTTGTTACCTGGGTGCACAAAAATTTTCAGGGTATATTAACCAATGAAACAAGATGTTTGAGGTGTGAGACAGTCACAGCTAGGGATG
AGACATTTTTTGATTTGAGCCTTGATATTGAACAAAACAGTTCAATTACAAGCTGCCTAAAAAATTTCAGTTCAACAGAGACCCTCAATG
CAGAGGACAAATTTTTCTGTGACAAGTGTTGTAGCTTGCAAGAAGCACAAAAACGGATGAAGATAAAGAAACCTCCACACATCCTGGTCA
TTCATTTGAAGCGCTTCAAGTATATGGAACAACTAGGTCGTTACAAAAAATTGTCTTACCGCGTTGTGTTTCCTCTGGAGCTAAAACTCA
GCAACACCACTGAAAACACAGATTCTGAGTATTCTCTATTTGCTGTTGTGGTTCATGTCGGAAGTGGGCCAAACCATGGGCATTATGTTA
GTCTTGTGAAAAGCCACAACCACTGGTTGTTCTTTGATGATGAGAATGCGGAGATCATTGATGAGTCTGCTGTTCAGACCTTTTTTGGCT
CAGCTCAAGAGTACTCCAGCAATACAGATCATGGCTATATCCTCTTTTATGAGAGTCTTGCAGCAAGCAAGAGCTGAAAATAGTACTCAC
ATGTTGAGACCTAACTATTGCGTATGTGTCTGCTCAACTTTTGTCGTGTTTAGCTTTCATGGTTCATTGGACCGGCTTAACGAATGTTTA
CGAGTTAAGTGTTCAACACACAAGGGGTTGCAAGTGTTTTGACTTGTTTTAACAATAAAGAGATGTAAATCTTGGTATAGAAACTTTAAT
GAGATGTTGATACTGTATTATTAGCTATGTAACTGCATCAACTTCCAGTGAACTCCATTGGCAGAACCCGGAAAGCAGGAATAAGTCAAG
TTTCTCCTTTGTGTAATTTCAATCTGAAAAACACTGCTCCTGTGTTGTTTTGTTTTGAGGTGCTGAGATGCACATTCATGGAGTATGACT
AGTACTTAATTATTCCTTTTCTTTCTTACAACAATGC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	3
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	5

mRNA member sequences (17)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	45	MATH	248
2	24243	Peptidase_C19	9
5	58292	Peptidase_C19	9
1.1	101414	TRAF-like	237
2	120676	Peptidase C19 ubiquitin carboxyl-terminal hydrolase 2 - Molecular Function: cysteine-type endopeptidase activity (GO:0004197) - Molecular Function: ubiquitin thiolesterase activity (GO:0004221) - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511)	8
5	130940	Peptidase C19 ubiquitin carboxyl-terminal hydrolase 2 - Molecular Function: cysteine-type endopeptidase activity (GO:0004197) - Molecular Function: ubiquitin thiolesterase activity (GO:0004221) - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511)	8

Preceding Unigenes (1)

Unigene	Build
SGN-U245209	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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