Sol Genomics Network

Unigene SGN-U270803

Unigene Basic Information

Unigene ID:	SGN-U270803
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270803
mRNA sequence:	Length: 729 bp

>SGN-U270803 Solanum tuberosum #4 (12 members)
AAATCATTCAGCCAAAAAGGAACAAGAACGCCCCCCTTTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATT
CAATCAAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAACGAAGCCGACGATGAGAAAAGAGAGCT
TGTTTTCAAAGAAGACGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGTTGTGAAGCTATGTGTATTGATGGAACTAA
GCGTCTTAGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTCCGTGACTATCAGGA
TGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAATACAAGGCTTAA
TGAGGGCATTGCTAATGGTCTGGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATCGACAAAATCTA
ATCTAAACTCAAAAACTGTTGTTACTGAGGTCTATCATAGACCTTGCTAATATTTCTGTGGCGTTCTTTTTCCATGAACATTGAAAAAGT
ATTTTTGTGTATCGTTTGAAGTTGTATGATTGAGTCTTGTGCGTCGAAGTTCTGTCTGAAAATTTGTGCTTTCATGAAATGAATGCAATA
TTCTGGCTC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (12)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1298	TIF_eIF-1A S1_IF1	14
2	24037	TIF_IF1 TIF_eIF-1A S1_IF1	9
5	58095	TIF_IF1 TIF_eIF-1A S1_IF1	9
1.1	102678	Nucleic acid-binding OB-fold subgroup S1 IF1 type - Molecular Function: RNA binding (GO:0003723) - Molecular Function: translation initiation factor activity (GO:0003743) - Biological Process: translational initiation (GO:0006413) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Eukaryotic initiation factor 1A (eIF-1A) - Molecular Function: translation initiation factor activity (GO:0003743) - Biological Process: translational initiation (GO:0006413)	11
2	121031	Eukaryotic initiation factor 1A (eIF-1A) - Molecular Function: translation initiation factor activity (GO:0003743) - Biological Process: translational initiation (GO:0006413) S1 IF1 type - Molecular Function: RNA binding (GO:0003723) - Molecular Function: translation initiation factor activity (GO:0003743) - Biological Process: translational initiation (GO:0006413) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup	7
5	131277	Eukaryotic initiation factor 1A (eIF-1A) - Molecular Function: translation initiation factor activity (GO:0003743) - Biological Process: translational initiation (GO:0006413) S1 IF1 type - Molecular Function: RNA binding (GO:0003723) - Molecular Function: translation initiation factor activity (GO:0003743) - Biological Process: translational initiation (GO:0006413) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup	7

Preceding Unigenes (1)

Unigene	Build
SGN-U245191	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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