Sol Genomics Network

Unigene SGN-U271200

Unigene Basic Information

Unigene ID:	SGN-U271200
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271200
mRNA sequence:	Length: 2633 bp

>SGN-U271200 Solanum tuberosum #4 (15 members)
GTTCTTGAGACACTTACATACTTGGCAAAGAACCATTCTTTAGTTGCAAAGACTCTACTTGAATTCAGGCTCCCTCGACCAGTGCTGGAA
GGGCCAATAGTTCCAGATCAGAGGCGGGGAAAAGCTGTTATGGTTGAGGCTGATGGACCAGATAGATGGCAGCTTGAAGGACAAGTATCT
CTTGCATTGCTTTTGGGCCTCTTGAATCATCCCCTTTATTTGAGAAGTGTTGCACATCTAGAGCAGCTGTTAAATCTGCTAGATGTTGTA
GTCCAAAACACAGAAAGCAAATCAAATGTGCATGAAGAACCTGGCACATCCTCTACAGAGCAACTGACTGGTCCTCCAATCCAATCTGCT
GCAGAAATGAATACTGAATCTCATGCAGCTTCATCTGAGGTTGAGGACAAATCTGGAGCATCGTCCTCTGTTGCAAGCAGAGACCAAAGT
ACTGAAAGTATTCTACTCAGTCTACCACAATTAGAGCTTCGACGCCTGTGCTCATTGCTTGCTAGAGAAGGTCTTTCAGACAATGCTTAC
TCTTTGGTAGCTGAGGTGCTGAAAAAGTTGGTGGCCATAGCTCCTGCCATTTGTCATTTATTTATTACTGAGCTTGCTGGCTCTGTGCAA
AGTCTGACCAGATCTGCGATGGATGAGTTAAACAAGTTTAGGGAAGTGGAAAAAGCACTGCTCAGTACCACTTCAACTGATGGCGCTGTG
ATACTCAGGGTTTTACAAGCATTAAGCTCTCTTGTTGCTTCAATTGGTGACAAGAACAACGAGAATCAAATTATTTCTGAGAAGGAGCAC
GGTGCTACTATCTCCCTGGTTTGGGACATTAACACAGCTTTAGAACCTCTATGGCAGGAGCTAAGCACTTGCATTAGCACAATAGAGAGT
TTTTCTGAAACAGCACCCAACCTGCCTCGCTCATCCATTGTTACCTCATCTAAACCTGCTGGAGCAATGCCTCCGCTCCCTGCAGGCACA
CAAAACATTTTACCGTACATAGAGTCCTTTTTTGTGATGTGTGAGAAGTTGCATCCTGGGCATTTGGGTGCAGGGCAGGAGTTCAGTATT
GCGACAGTTCCTGATCCAGAAGAAGCTACTGCTTCTGCTATGCAGCCAAAAACACCTACATCGGCAACAAAAGTTGATGAGAAGCACATT
GCTTTTGTAAAATTTGCAGAGAAGCACAAAAAACTTCTTAATGCTTTTGTTCGGCAGAATCCTGGACTACTGGAGAAGTCTTTCTCCATC
ATGCTGAAGGTTCCTCGTTTTGTTGATTTTGACAATAAAAGGTCATACTTTAGATCTAAGATTAAACATCAACACGATCATCATCACAGT
CCTCTGAGAATTTCTGTGAGAAGAGCTTATATACTTGAAGATTCATATAATCAGCTTCGCATGAGGACAACTCAAGAATTGAAAGGGAGA
TTGACTGTACATTTCCAAGGGGAAGAAGGAATTGATGCTGGTGGACTTACTAGGGAATGGTATCAGTTACTGTCCAGAGTAATTTTTGAC
AAGGGAGCACTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTTTACCAAACTGAGCACCTCTCATAC
TTCAAATTTGTTGGGCGAGTTGTTGGCAAGGCACTATTTGATGGTCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATA
CTTGGTGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTACTTCAAAAATTTGAAATGGCTGCTTGAGAATGACATAAGT
GATATTTTAGACCTTACATTCAGTATTGATGCTGATGAAGAGAAGTTGATACTTTATGAACGCAATGAGGTGACTGACTATGAACTAATC
CCGGGTGGACGAAATATCAGAGTCACTGAGGAAAATAAGCAACAGTATGTTGACTTGGTTGCTGAGCATCGGTTGACAACTGCTATCCGT
CCTCAGATAAATGCATTTTTGGAAGGATTCAGTGAATTGATTCCGCGAGAGCTGATCTCTATTTTTCATGACAAGGAACTTGAGTTGTTA
ATTAGCGGTCTTCCAGACATCGATCTTGATGACTTAAGGGCAAATACAGAATATTCTGGATACAGCCCAGCTTCACCTGTTATTCAGTGG
TTTTGGGAAGTTGTTCAAGCTTTTAGCAAGGAAGACAAAGCTCGCCTTCTTCAATTTGTCACTGGAACCTCAAAGGTGCCATTGGAAGGG
TTTAGTGCACTGCAAGGAATTTCAGGTTCCCAGAAATTTCAGATCCACAAAGCTTATGGCAGTGCTGATCACTTGCCTTCAGCACATACA
TGTTTTAACCAGTTGGATCTACCAGAGTACCCCTCTAAAGAGCATCTAGAGGAGAGACTACTGCTTGCCATTCATGAAGCCAACGAAGGA
TTTGGATTTGGTTAAAACACTAATGGGTTTTCTGAATTAGATTCTGTAGATAACTTCCATGTTAAAAAAGAGATTTTTTATTTATTTATA
CAGGAGAACAGTCTAAGGGCATTTTAAGTCTGTGAGATACCTGTCTATAATGCTGTACAGTCTATTTGCTATGCCAAATGATCCTGGCAG
TTCTTTTTTTGGCAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	2
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TUBS	Tubers	5976	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (15)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	21	Armadillo	362
2	22655	HECT_domain	22
5	57793	ReticulocyteBP HECT_domain UBA_domain Rim_ABC_transpt UIM Armadillo Polycystin_cat	11
1.1	101373	Armadillo-like helical - Molecular Function: binding (GO:0005488)	564
2	119038	HECT - Molecular Function: ubiquitin-protein ligase activity (GO:0004842) - Cellular Component: intracellular (GO:0005622) - Biological Process: protein modification (GO:0006464) - Biological Process: ubiquitin cycle (GO:0006512)	22
5	130639	Armadillo-like helical - Molecular Function: binding (GO:0005488) HECT - Molecular Function: ubiquitin-protein ligase activity (GO:0004842) - Cellular Component: intracellular (GO:0005622) - Biological Process: protein modification (GO:0006464) - Biological Process: ubiquitin cycle (GO:0006512) Ubiquitin interacting motif Ubiquitin-associated Region of unknown function DUF913 E3 ubiquitin ligase TOM1 - Molecular Function: ubiquitin-protein ligase activity (GO:0004842) - Biological Process: ubiquitin cycle (GO:0006512) - Biological Process: mRNA transport (GO:0051028) Region of unknown function DUF908 E3 ubiquitin ligase TOM1 - Molecular Function: ubiquitin-protein ligase activity (GO:0004842) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: ubiquitin cycle (GO:0006512) - Biological Process: mRNA transport (GO:0051028)	9

Preceding Unigenes (2)

Unigene	Build
SGN-U247214	Solanum tuberosum #3
SGN-U255604	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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