Sol Genomics Network

Unigene SGN-U271234

Unigene Basic Information

Unigene ID:	SGN-U271234
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271234
mRNA sequence:	Length: 1476 bp

>SGN-U271234 Solanum tuberosum #4 (15 members)
GAGAGAGAGAACTACTCTCGAGTCTTTTCTTTTCTCTCTCTATATCAACAACTCTCCATCTTTCTTACCTGAAAAAAAAAGTTCTTTTCA
CATCACTGCTCTTTTTTTAGCTCTGTTTTTCTTCAAGAAATCTAAAAAAAACAAAATGATGGTTGAAAAAGAAGATTTGGGGTTAAGTCT
TAGCCTCAGTTTTCCAGATAATAACAATAAGAAGAATACTCAGCTCAATCTTTCACCTTTCAATATCATTCAAAAAACTTCTTGGACTGA
TTCTTTATTCCCTTCTTCAGATCGGAACATTGAGACATGTAGAGTGGAGACGAGGACTTTTTTGAAGGGAATCGATGTGAATCGGCTGCC
GGCGACGGGTGAGGCCGACGAAGAAGCCGGCGTTTCGTCGCCGAACAGTACGATTTCGAGTGTGAGTGGAAATAAGAGAACTGAAAGAGA
AGCTAATAATTGTGATCAAGAGGAACATGAAATGGAAAGAGGTTCTGATGAAGAAGATGGAGAAACTTCTAGAAAGAAATTAAGGCTCTC
AAAAGACCAATCTGCCATTCTTGAAGAAAGTTTCAAAGAACACAATACACTCAATCCTAAACAAAAGCTGGCTTTGGCCAAAAGACTGGG
ATTAAGGCCCAGGCAAGTTGAGGTGTGGTTTCAGAATAGGAGGGCAAGGACAAAGTTGAAGCAAACAGAAGTTGACTGTGAGTTCTTGAA
GAGATGTTGTGAGAATTTGACAGAGGAAAACAGGAGATTACAGAAAGAAGTTCAAGAGTTGAGGGCATTAAAGCTTTCACCTCAATTCTA
CATGCAAATGACCCCTCCCACCACCCTCACCATGTGCCCTTCATGTGAGCGTGTTGCGGGCCCACCGTCATCCTCATCTGGGCCCACATC
CACACCAATGGGCCAGGCCCAACCCAGGCCCATGCCATTTAACCTATGGGCCAATGCACTACATCCTAGATCATGATTTTGCAAGAAGGG
CAATTTGGTCAAATGAAAGTGACAAGACAAACTTGTAATAGAGTACCATAATGTTTTGTGTATGAAAATATTAATTTTTATGGTCTAAGA
TATGGTTGTTGGGACTTGAGAATGGGGATTTGGTGGGTCAAAGAATCTTTGATTTCTATTATTGACTATATCTTTTTCTTGTATTTACAA
ATTAGGCTTATTAGTCTTTTTTTACTATATTTGGTAGTAAGTACTAATAGTTTGCTTTTTCCCCATTTTGAGGTTGTTATTGGTAGGGTA
AGAGGAAGAGGACTTTTTAGATGTAAAGTTATGAAGGATATCAACTATTATGGTTATAGATTTACTTGGAGAAGTTTTTAAGTTCGTCTA
TTGATCATATTCTTGCATTTTTAACTTTTTGCTAATTGCTTGTCATAATGTCATATCAAATAACTTTCCTTAGTGGCTAAGTTTCAAAGC
AAAGAGTACAGTATGTTACCTCTCACAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	CSCH	Tubers	5038	2
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3

mRNA member sequences (15)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 7 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	60	Homeobox	203
2	22354	Homeobox	33
5	56625	Homeobox Leu_zip_homeo	28
1.1	101432	Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeobox - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) Homeodomain-like	183
2	118482	Homeobox - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeodomain-like	93
5	129263	Homeobox - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) Leucine zipper homeobox-associated - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeodomain-like	28

Preceding Unigenes (3)

Unigene	Build
SGN-U246545	Solanum tuberosum #3
SGN-U261392	Solanum tuberosum #3
SGN-U261393	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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