Sol Genomics Network

Unigene SGN-U271487

Unigene Basic Information

Unigene ID:	SGN-U271487
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271487
mRNA sequence:	Length: 1258 bp

>SGN-U271487 Solanum tuberosum #4 (14 members)
CGGCATCTTTGTAACAGTCCATTGGGTATCTTGTGTCAGTTTACTGCTTCAAGTCAACTGAATTTAGATTTACAATTAGAGAGCAATACA
TTTTTTCTAGTGTGAATTCATGAATAGCTCTTCTCAGCTGGCGAGTTTCTTCTTCCTCGTCTTCATCCTAGCGTTCATACACGAATCGTC
CAGCTCAGTGATCATCAATCCATCTAAGTCCAAGCAAATTTCATGGAAACCTAGAGCTTTTGTATATGAAGGATTTCTTACGGATGAAGA
ATGCAATCACTTGATATCACTCGCGAAATCGGAGCTGAAGAGATCCGCTGTGGCAGATAATGAGTCTGGAAAGAGTAAGCACAGTGAGGT
TAGGACCAGCTCCGGAATGTTCATTTCCAAAGCTAAGGATCCTATTGTCTCAGGGATAGAGGATAAGATAGCAACTTGGACCTTTCTACC
CAAAGAAAATGGAGAAGAAATACAAGTACTACGATATGAGGAGGGACAGAAATATGAGCCGCACTATGATTACTTTGTAGACAAGGTTAA
TATTGCTCGAGGTGGACACAGGTTTGCCACTGTACTTATGTATCTCACAGATGTTGAAAAGGGAGGTGAGACTGTCTTCCCAAAAGCAGA
GGAATCTCATCGACGTAGGTCAATGGCAGCGGATGACAGTTTGTCTGAATGTGCAAAGAAGGGCATAGCAGTGAAGCCACGGAAAGGAGA
TGCCCTGCTTTTCTATAGTCTCCATCCAAATGCCACTCCTGATCCTATTAGCCTCCATGGTGGGTGCCCTGTACTTCAAGGTGAGAAATG
GTCAGCAACAAAGTGGATTCATGTGGATTCCTTTGACAAAACTGTGGGTATCGATGGAAATTGCACCAATGCTGATGAGAATTGTGAGAG
ATGGGCTGCTCTTGGCGAATGCACCAAGAATCCAGAGTATATGCTGGGAAGTGCAGGCCTTCCAGGATATTGTAGGAAGAGCTGCAAAGC
ATGTTAAATCAGTATGCTTCTCTCTCCCACTAAATTAGTGTCCAGAGTCGAGACAGTGACAGTACTTTGGTTTAGTTGTTTGTATTGTAT
GTTCTCAATCCAAAACAAGTTTTCTTCAACTTCCTCTTTTCCTTTTTGCCTGCTTGGCTTATTGACGTTTGTGCACCACATTGCATATTC
TGTTTTGATCTGCTTCCACATACAGGTGCAAGCTTGCAAGAAACAAAAATTTAATATAATATGATAGCTAGGACTAAGCCTCGTGCCG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3

mRNA member sequences (14)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	364	2OG-FeII_Oxy	46
2	22200	2OG-FeII_Oxy	46
5	56441	2OG-FeII_Oxy	42
1.1	101726	Prolyl 4-hydroxylase alpha subunit - Molecular Function: oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen 2-oxoglutarate as one donor and incorporation of one atom each of oxygen into both donors (GO:0016706) - Biological Process: protein metabolism (GO:0019538)	43
2	118645	Prolyl 4-hydroxylase alpha subunit - Molecular Function: oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen 2-oxoglutarate as one donor and incorporation of one atom each of oxygen into both donors (GO:0016706) - Biological Process: protein metabolism (GO:0019538)	40
5	129157	Prolyl 4-hydroxylase alpha subunit - Molecular Function: oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen 2-oxoglutarate as one donor and incorporation of one atom each of oxygen into both donors (GO:0016706) - Biological Process: protein metabolism (GO:0019538)	35

Preceding Unigenes (1)

Unigene	Build
SGN-U246702	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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