Sol Genomics Network

Unigene SGN-U272217

Unigene Basic Information

Unigene ID:	SGN-U272217
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	272217
mRNA sequence:	Length: 1420 bp

>SGN-U272217 Solanum tuberosum #4 (11 members)
CGGCACCATCTCTCCTCCCTTCAATCGACTGCCATTTTCGTATAACATCATATAATACTGACAAAAGAGGGAAGAAAACTCGAACAAAGT
CATGGCGATGAGAGACTTGGTCACCGGTGCTCCTAGTTGTGGCGAACCTTCTTCTTCTTCTAATCCACTTGGTGCTCTCGCTAACGCACT
CATCGGTTCATCATCTAAGACTCAGGAGAGGCTAAAAGAGATCCCTACATCAGTAACTACATCGTCCAATGGCAACTTCCTTGTGGGTGT
TGAAGAGCCATTTGTCTCACTTCCAGGATCAGAGTTTGAACATCCACTTCAGCCTAATATTCAGGGTTCCCAATTCCTTCAAGGGTTTCG
TTCTGCTGATCAAAATAGGCTCGCTGATGCTTGGGATGAGATACAAAGGCCTCAACTTCCTTTTGCTCATGGAAGTCAGAACATGACAAA
CATCCCTTTGGAGCATGCTCGGCTTCAACCAGATTTGAATGGGCCTCCACAACAAGTATTGTCAAGCTTTCTGCACTCGTTTGTCAACAG
CGGTCATGGTGGCGTTCCGTTTCGTCCTGCTTCGCTGCCATTATTAGGTTTATCAGAAGGTGACAAGCAATGCATACGGGACCGTAGCAC
GATCATGGCCCGACATTTTTTTGCCGATAAAACTGAAGACTTCATAAATGGACAGGTTAATGCTCTATTGTCTTCATTAGAAATTGATAA
TCATGTTAGGGCAAGGGGCCCTGTGCCTGGAAGATATCCCGAGCTTGAGGAGTATTGGAATGAGTCATTAGCTATGAAACCTGTGCCTCA
TGTTGCAGATGGATGGATTAATGAGTTTGCACAGAACCGAGTAGGACATGCTGATCCCAATGCTTGGGCCCAATCATTTGAACAACAACA
TGGTGCTAATGGCTGGGCATCTGAATTTGAGCATGAGCAATCCCAACTTGGAATGATTGGTCAAATGAGAGGTGCAAATATTCCTAATCT
AGCAGCAATGGAACAAACACGTATGTTGGCCCATACATTAGCTCAAAACAGTGACCCAAAATTTCAGAATTCCAAATTTCTCCAATTTGT
ATCCAAGATGAGTCGTGGTGAAATTTCTATTGAAGAAAATCAATTCAAGCCTGCTACAATTTCTTCTGGGGATTGGGCAGCAGAATATGA
ACAGCAGCATAATGGAGGTCAATCATGGGCTGACCAGTTTGCACATGAGGAGCTTTCTCGTGGACCACAAGGGTGGGTGAATGAGTTTTC
TGCTGAACGTGCGCAGCATGGATCTGTAAATGATGAGTGGGTAAGTGAATTTTCAAAGTTGAATGTGAATGATGATTGGGCAGATGAATT
TGGGCGTCAAGTTGCTGAGGGAGCATTTGGTGAAACCTCTGCTGATGGTTGGGCAGAGGCTTATGATGAG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (11)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	159	TPR	87
2	23915	TPR	10
5	62808		3
1.1	101461	Tetratricopeptide TPR_1 Tetratricopeptide region	130
2	120851	Tetratricopeptide TPR_1 Tetratricopeptide TPR_2 Protein prenyltransferase Tetratricopeptide-like helical - Molecular Function: binding (GO:0005488) Tetratricopeptide region	8
5	135958		3

Preceding Unigenes (1)

Unigene	Build
SGN-U246083	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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