Sol Genomics Network

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Unigene SGN-U278783

Unigene Basic Information

Unigene ID:	SGN-U278783
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	278783
mRNA sequence:	Length: 1616 bp

>SGN-U278783 Solanum tuberosum #4 (24 members)
CTTACGATAATCTCAGTAGTATATAATCTAATTACTTAAATACACACTATGTTGTAATATTATGAATTTTACCAGATTTGGTAAGTCCAG
ATATGTATATCTCGGAATATATAGACTCAAAATCAATTTGTTCTAGATACACTCTATCTAAGTAAATTCGCATGCATCTAGGATACATAG
ACAAATCTCGCGCCCTCGCCTCCCTCCCATCTTGATGTTCACTCTTTTATCTCGCTCGCGTATCTGGTATGCGAGATACATGTTAATTAC
ACTAGATTTTTTGCTAGTTTTATTGAAACAAACCATTGTTTGTCATATTTAATTTGAAAATTTCCTCATTTTCTTGATGTTAAAGAACTA
TAAGTTTGAAAAGAAAAAAAAAGTAGGGCTAGCCCGCCCCAACCCTCAAACCTTCTAAGATTGGGTTGGGTTGAACATTTTCAGGCCCTT
CCAAATGAAGGGTCGCCCACCCTAGCCCTTCAAATTCCTTGGCCCATGAGACTTGGACCGGGTGGGGCTGGGTCGACCCTTTTTTTGACA
GCTTTAAATTAACATTTAAATAAAAGAGAGATAATTTTAAAAAAAAATTTAATTAAATTTATTAATAAAAATCATTATAAATATACATTA
CTCCCTCCATCCCATTTGATGTGTCACTTTTCAGATTTTGAGATTCAAACAAATCTAATTTTGATCGTAAATTTTTCACAGATCTTTTAA
ATATTTTGAATTATCAATTATTGCGATTTATAGTACTTTTTACGTAGTTTACAAATATATAAATTTCATTTCAAAAAAATTAAAGATTTC
ATGTGCAAATTTCCAATTAAATTTAAACTGTTTGATTTCGAAAAAGGAAAAGTGTCGTGACAGAGGCAGCATTTATTAGACACAAACATT
GATATTTGCATGCATCGAGAAAGGCGAAACAAACAAAAACTGATAAAAAAAAAGAAAAGGAAAATCGGAGTGTGTAGAAGAAAACAAGAA
GAAAAGATGCCTCGGAGTCGATTTGCAGGATCATTGATTTCTCCAAAGGTGGATGTTTACATTGATATGGGAAACCCTTTTCTAAATCAC
ACTGTTGATGCTTTCTTGAAGATCGGCACTGTTGCTGCCACCAAAACTGTTGCTGAAGAAACTTACGGAATAGTCACTAGAGGCAGTGTT
TCGAGTCACAACTTTGAGAAATCGTTGAAGAAAATGTGTAAAGAAGGTGCTTATTGGGGGACTGTTGCTGGGGTATATGCTGGAATGGAG
TATGGAGCGGAGAGAATTCGTGGAACCAATGATTGGAAGAATGCTATGATTGGGGGTGCGTTGACAGGAGCTCTCATATCTGCTGCAAGC
AACAACAACAGAGACAAGATTGTAATGGATGCCATTACAGGAGGTGCTGTTGCTACTGCTTCAGAGTTCCTTAATTATCTCACATGAATT
TACTTACCAAACTGCTAAAAACATTGCTTTTAGTATTTGCTCTATTTCTCTCTATTTGACTACGTTTAACTCGATCTATAATTTAGCTAA
TCTTTCCCAATAAAAAAAAAAACTTGTTTAGTATTTTCAGTGGTACTCTTTTTAAAAAAAAAAAAAAAAAAAAATCCTGCAGCCCG

[Blast] [AA Translation]

Associated Loci (3)

Locus symbol	Locus name	Gene activity
leafy	leafy
Z13992	Z13992 proteinase inhibitor 2	proteinase inhibitor
pom14	X94304 POM14

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	2
Solanum tuberosum	CSCH	Tubers	5038	2
Solanum tuberosum	CSWB	Tubers	6124	8
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	SWST	Stolon	5942	3
Solanum tuberosum	TUBS	Tubers	5976	3
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (24)

Alignment image suppressed for unigene with 24 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	819	Tim17_Tim22	23
2	27156	Tim17_Tim22 Tim23	4
5	61240	Tim17_Tim22 Tim23	4
1.1	102209	Mitochondrial import inner membrane translocase subunit Tim17/22 - Cellular Component: mitochondrial inner membrane (GO:0005743) - Molecular Function: protein transporter activity (GO:0008565) - Biological Process: protein transport (GO:0015031)	19
2	121079	Mitochondrial import inner membrane translocase subunit Tim17/22 - Cellular Component: mitochondrial inner membrane (GO:0005743) - Molecular Function: protein transporter activity (GO:0008565) - Biological Process: protein transport (GO:0015031)	7
5	133493	Mitochondrial import inner membrane translocase subunit Tim17/22 - Cellular Component: mitochondrial inner membrane (GO:0005743) - Molecular Function: protein transporter activity (GO:0008565) - Biological Process: protein transport (GO:0015031)	4

Preceding Unigenes (2)

Unigene	Build
SGN-U252228	Solanum tuberosum #3
SGN-U253779	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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