Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U578592 in the current build, Tomato 200607 #2

Unigene SGN-U312707

Unigene Basic Information

Unigene ID:	SGN-U312707
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312707
mRNA sequence:	Length: 955 bp

>SGN-U312707 Tomato 200607 #1 (42 members)
AACTTCTTTGCCACCACTCCGCCGCTCACTCAATTTGCAGAGACGATTCTTCCCATTCTACTTTGAGCCATGAGTAAGCTTCAGAGTGAT
GCCTTAAGAGAAGCCATCACCGTGATTAAGAATGATTCAAGTGAGAAGAAAAGGAAGTTCACCGAAACCATTGAGCTTCAGATTGGTTTG
AAAAACTATGATCCTCAAAAGGACAAGCGTTTCAGTGGTTCAGTTAAGTTGCCACACATTCCTCGCCCCAAGATGAAGATTTGCATGCTT
GGAGATGCTCAGCACGTGGGAGAGGCAGAAAAGATTGGTTTGGAGTACATGGATGTGGAAGGTCTGAAGAAGCTTAATAAAAACAAGAAG
TTGGTTAAGAAGCTCGCAAAGAAGTACCATGCTTTCTTGGCATCAGAAGCTGTTATCAAGCAGATCCCCCGTCTCTTGGGGCCTGGTTTG
AACAAGGCAGGTAAGTTTCCTACCCTTGTTTCCCACCAGGAATCACTCGAGTCTAAGGTAAACGAGACCAAGGCGACTATCAAATTCCAG
TTGAAGAAGGTTCTTTGCATGGGAGTTGCCGTAGGTAATATGGATATGGAGGAGAAACAAATCTTCCAGAACGTGCAGATGAGTGTCAAC
TTTCTCGTGTCCTTGCTAAAGAAGAATTGGCAAAATGTGAGATGCTTGTACTTGAAGAGTACCATGGGAAAGACTCAACGCATCTTCTAA
GGACATTGTATTACAATCTTTGCAGTTTCAGGCGTTTTGACTTGTACGCGTTATAGATACTATTGCATTTTTTGTTTAGTTGTGCTCCTT
GGATACTGAGTTGAAAACTTTATATCAGTTTTGTTATGATTTTACTTTTTCTTTTCTCCTTTCTGTTGATTTTCTTGAATATTGTCAACT
TTCATATCTAAAGGAAAACTCAAATTTTGTGGTTAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (19)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	4
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	4
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	7
Solanum lycopersicum	cTOS	suspension cultures	8026	3

mRNA member sequences (42)

Alignment image suppressed for unigene with 42 aligned sequences.
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Markers Information (0)

Expression Data (0)

Annotations (manual: 3 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101720	Ribosomal protein L1 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	43
2	118981	Ribosomal protein L1 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	23
5	129368	Ribosomal protein L1 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	23

Preceding Unigenes (1)

Unigene	Build
SGN-U212965	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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