Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U577906 in the current build, Tomato 200607 #2

Unigene SGN-U312728

Unigene Basic Information

Unigene ID:	SGN-U312728
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312728
mRNA sequence:	Length: 2289 bp

>SGN-U312728 Tomato 200607 #1 (60 members)
GGCGATTGGCGGCCAATCGGCCGAATTGCTTTTGACGCTACAAAAATAAACCCTAGTTTTTCTTTGCTCTCACCCTTCAGAAGCAGCCGC
TCCAATTCCTCCATCAACACTAAAAAATGACAAAGAGGACCAAGAAGGCTGGAATCGTTGGGAAGTATGGTACCCGTTATGGTGCCAGTC
TGCGTAAGCAGATTAAGAAGATGGAGGTTAGCCAGCACAGCAAGTACTTCTGTGAGTTTTGTGGAAAGTATGCTGTAAAGAGGAAAGCAG
TGGGAATTTGGGGTTGCAAAGATTGTGGCAAAGTCAAAGCCGGCGGTGCTTACACATTGAACACCGCGAGTGCTGTTACAGTTAGGAGTA
CAATCCGAAGACTGAGGGAGCAGACTGAGAGTTAGAGCAATTGTCCCTTGCGGCGGTGCAGCTTATGATCTACTTATTTCGACATGTTTT
TCAATTTTGAGTATTTTTATGTTGTGAGATCAAGACATGTTTCTCAATTTGAGTACTTTGTGATGTTCTGAATCATCTCAATTAACCATT
AGTATAAACCTGTGTTTTTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGT
GCCTCTCTCACATTTCCAATTTTGTCACTCTCGACTAATTGTTCGCGCCCGCCACCACCAAACACCTAATCTACAGGGAATTTGATAGCT
ACAAGGAAGCGGATATGTCTGGGATTATAAATCGAAAAATGGCTACCAGAGGCATTTCTGCTTTGAATATGAATCAGTTCCTGTTGGGAA
GCAGGGTATTTGCATCTAGAAATTTTTCTTCAGCAACTAAAGAGATGACTGTCCGTGATGCTTTGAATTCTGCTCTGGATGAAGAAATGT
CTGCGGATCCAAAGGTCTTTATAATGGGAGAGGAGGTTGGTGAATACCAAGGAGCCTATAAGATTACCAAAGGGCTGTTGAATAAATATG
GTCCACAAAGAGTTCTTGATACACCCATTACTGAGGCTGGATTTACTGGAATGGGAGTTGGTGCTGCTTACCATGGTTTGAAGCCTGTTA
TAGAATTCATGACTTTCAACTTTTCAATGCAGGCTATTGACCATATTATCAATTCTGCTGCAAAATCAAATTATATGTCTGCCGGTCAGA
TCGCAGTCCCCATCGTCTTCAGGGGTCCTAATGGTGCTGCAGCTGGAGTAGGTGCTCAACACTCTCAGTGCTATGCGGCGTGGTTTGGTG
CATGTCCTGGATTGAAGGTGCTAGCTCCATACTCGTCTGAGGATGCTCGCGGTCTGCTAAAAGCTGCTATCAGGGACCCAGATCCTGTTG
TTTTTCTGGAAAATGAATTGCTATATGGTGAGTCTTTCCCTGTTTCTGCTGAAGTTCTTGATTCTAGTTTCGCTCTTCCCATTGGAAAAG
CTAAGATTGAACGTGAAGGAAAGGATATCACAATTACTGCTTTCTCAAAGATGGTTGGTTCTGCTCTTAAGGCTGCTGAAATTCTTGCAA
AAGAGGGAATTAGTGCTGAGGTCATAAATTTGCGCTCTATCCGACCGCTTGATAGATCCACCATTAATGCTTCTGTGAGGAAAACCAACA
GGCTTTTAACTGTTGAAGAAGGGTTCCCACAACACGGCGTTGGAGCTGAGATCTGTGCTTCTGTGGTTGAGGAAAGTTTTGAATATCTTG
ATGCACCAGTTGAGAGGATATCTGGGGCTGACGTTCCGATGCCATATGCAGCAAATCTAGAAAGAATGGCTGTTCCACAGATTGAAGATA
TTGTTCGTGGAGCAAAGAGGGCATGTTACAGAGCAGCAAAATCAGTTCCAATGGCTGCAACTGCTTAAGCTTTGGTAGGAACAAAGACTG
CCAAGCTGGTTCTAAGCGTTTTATTTCCTCTTATGTGGATATTGATTCTTTATCCGCCTGCGAGTGGATGCTTCTATATTTACCATCCTG
AGAAGTTTAATTTGTCCATGAAAAGAAAATGCTAAATGTTAGAAAATAATTTTTGCCGTTTACTTGCGCTCTCTTTTCACTGGTGTTACC
AAATGTTATGTAAGACTTGTCAGTTTTGACCGCTGAGGGTTCACGAGAACAAACTCTGTAGTGATATGTAATATGATATATGCTTGCATT
ATTTGTAATCTACAAAACAATGTATTGATCTCAAATAACGCCAATCCAGTTTTTGAAGAGGCTCGAATAACATCACTTGGTGTAACTTGT
TAAAAAAAAAAAAAAAAAAAAAAACTGAGACTAGTTCTC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (24)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	5
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	3
Solanum lycopersicum	LB	Leaf Mature leaves	3316	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	7
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	6
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	3
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	4
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	4
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1

mRNA member sequences (60)

Alignment image suppressed for unigene with 60 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (7)

Annotations (manual: 2 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101625	Transketolase C-terminal Transketolase central region Transketolase C-terminal-like	56
2	118698	Transketolase central region Transketolase C-terminal Transketolase C-terminal-like	35
5	129763	Transketolase central region Transketolase C-terminal Transketolase C-terminal-like	16

Preceding Unigenes (1)

Unigene	Build
SGN-U213307	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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