Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U579558 and SGN-U593300 in the current build, Tomato 200607 #2

Unigene SGN-U312783

Unigene Basic Information

Unigene ID:	SGN-U312783
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312783
mRNA sequence:	Length: 3234 bp

>SGN-U312783 Tomato 200607 #1 (137 members)
CCCTAATCCCATTTTCCTCTAAACCCATCTTCCCCTTTTCCATCTATATTCTTCAACAATCTCCCAGATTCTTCTGGGACTTCAGGTCCA
TCATGGCTAGAGCTCTAGTTCAGTCAACAAGCATCCCATCGTCAGTTGCTGGTGAAAGGACAACCAAATTCAATGGATCTGGGAAAACAA
AAAGAGCTGTTACAATGCTATGCAATGCACAATCATCTTCACTTACACTGAGGGATTTTACAGGATTGCGAGGATGCAATGCAATAGATA
CACTAGTTAGATCTGGCCAAACTCTCCAATCCAAAGTAGCTGCTGCAACTTATGTCAGACGGCCACGAGGTTGCCGATTTGTACCAAAAG
CAATGTTTGAGCGCTTCACAGAGAAGGCGATAAAAGTCATTATGCTTGCACAAGAAGAGGCCAGACGACTTGGTCACAATTTTGTTGGCA
CTGAGCAGATCTTGTTGGGTCTAATTGGTGAGGGAACTGGTATTGCTGCCAAGGTTCTTAAATCGATGGGGATCAATTTGAAAGATGCTC
GTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATCCCTTTTACCCCTCGTGCCAAGCGTGTTCTGGAAC
TCTCTCTGGAGGAAGCCCGCCAGCTAGGGCATAACTATATTGGTTCGGAGCACTTGCTACTTGGATTGCTACGTGAAGGTGAAGGTGTGG
CTGCCCGTGTTCTTGAAAACTTGGGTGCTGACCCCAGCAACATCCGCACTCAGGTGATCCGGATGGTTGGTGAGAGTAATGAGGCTGTTG
GTGCTAGCGTTGGAGGTGGAACTTCTGGCCAAAAAATGCCAACACTGGAGGAGTATGGAACAAATTTGACAAAATTGGCGGAAGAGGGAA
AATTGGACCCCGTTGTTGGAAGACAGCCGCAAATTGAACGGGTCACTCAAATCTTGGGTCGGCGGACTAAGAACAACCCTTGTCTTATTG
GTGAACCAGGTGTTGGCAAAACAGCTATTGCTGAGGGTTTGGCACAAAGAATTGCAAATGGTGATGTCCCTGAAACAATTGAGGGGAAGA
AGGTGATAACTCTTGATATGGGATTGCTTGTTGCTGGGACAAAATACCGTGGAGAGTTTGAGGAAAGGCTAAAAAAGCTGATGGAGGAAA
TTAAGCAGAGTGATGAAATAATACTATTTATCGATGAAGTGCACACATTGATTGGAGCTGGAGCAGCAGAGGGGGCCATCGATGCTGCAA
ACATCTTGAAACCTGCCCTAGCTCGAGGTGAACTACAGTGTATCGGAGCTACTACACTGGATGAATACAGAAAGCATATTGAGAAAGATC
CTGCACTAGAGAGGAGATTCCAACCAGTTAAGGTCCCTGAACCTACTGTTGATGAAACTATACAGATTCTGAAAGGGCTTCGTGAGAGGT
ATGAAATTCATCACAAACTTCGTTACACTGACGAAGCCTTAGTGGCTGCTGCTCAGCTCTCATACCAGTACATCAGTGACCGATTTCTGC
CTGACAAAGCAATTGATTTGATTGATGAAGCTGGTTCTCGTGTTCGACTTCGCCATGCTCAGCTCCCCGAGGAAGCAAAAGAGCTCGAGA
AAGAACTTCGTCAGATAACAAAGGAGAAGAATGAAGCTGTTCGTGGTCAAGATTTCGAAAAGGCTGGGGAATTACGTGATAGAGAAATGG
ATCTGAAGGCACAGATCACAGCCCTCATAGACAAAAACAAAGAGGTGAGCAAGGCTGAAAGTGAGGCTGCAGATACAGGTCCACTTGTGA
CAGAAGCAGATATTCAGCACATCGTCTCTTCTTGGACTGGTATCCCTGTTGAGAAGGTCTCCACTGACGAATCTGACCGTCTCCTAAAAA
TGGAAGAAACACTTCACACACGAATCATTGGCCAGGATGAAGCTGTCAAAGCCATTAGTCGCGCTATTCGACGTGCACGAGTTGGGCTCA
AGAATCCCAACAGACCTATTGCTAGTTTCATCTTTTCCGGTCCCACTGGTGTTGGGAAATCAGAACTGGCAAAGGCACTGGCTGCATATT
ACTTTGGTTCTGAAGAAGCAATGATCCGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTCTCTAAACTCATTGGATCCCCCCCTG
GTTATGTTGGTTACACAGAGGGTGGTCAATTGACTGAAGCTGTTAGGCGTCGACCTTATACAGTTGTGCTCTTTGATGAGATTGAGAAGG
CTCATCCTGATGTCTTCAACATGATGCTTCAAATTCTTGAAGATGGAAGATTGACAGACAGCAAGGGTAGAACTGTAGATTTCAAGAACA
CACTTCTCATCATGACATCAAATGTTGGAAGTAGTGTAATTGAGAAAGGTGGCCGTCGTATAGGTTTTGATCTCGACCTTGATGAGAAGG
ATAGCAGTTACAATCGCATCAAGAGCTTAGTGACAGAAGAATTGAAGCAGTACTTCAGGCCAGAGTTTTTGAACAGATTGGATGAGATGA
TTGTATTCCGTCAGCTCACTAAGTTAGAGGTTAAGGAGATAGCTGATATCATGCTTAAGGAGGTCTTTGAGAGGTTGAAAGTTAAGGAGA
TAGAACTTCAAGTGACAGAGAGGTTTAGAGACAGGGTGGTTGACGAGGGATACAACCCTAGCTATGGAGCACGACCTCTGAGAAGAGCTA
TTATGAGACTTTTAGAGGACAGCATGGCTGAGAAAATGCTTGCAAATGAGATTAAAGAAGGTGATTCAGTTATCGTGGACGTTGATTCAG
ATGGCAATGTGACTGTCCTCAATGGAAGTAGTGGTACTCCCTCGGATCCGGCTCCTGAGCCTATCCCCGTTTAGATCAGGTGATCACATT
TTAGCTCAACAGTCTCTGTGTGGTCTTTTAAGAGTTCATTTGTGTTGGCCACTAAGCTTTGTGGGGCTTATGAAGCAACTTTTGAGTTTA
TCTCTGGGAATGCTCAGGTAAATCTTGCCACGTCGAGAAGGCAGCATCCTTTCTATGTTGATCTTTAATGATTTTACAGAAGTATACTGG
ATTAAGATTGTAGTTGGTCACAAGAAAGTATTGTATTAACAAGACACTCCTTATCAAAAAACATATCTAGTTTATTGTAGGCGACAGTTG
AATCGTTATCCTCGTAAAAAAAATCTAATGTAGTTATCTGCGCTTAAAAAAAAAACTCTTTTAAAAAAAATAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (26)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	4
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	7
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	26
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	9
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	7
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	12
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	11
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	4
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	3
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	4
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	6
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	4
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	4
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	7
Solanum lycopersicum	cTOS	suspension cultures	8026	6
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	cTSD	seed	1504	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	6

mRNA member sequences (137)

Alignment image suppressed for unigene with 137 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (7)

Annotations (manual: 1 | blast: 2 | go: 9 )

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P241961 (953 Aa)

LIPFSSKPIFPFSIYILQQSPRFFWDFRSIMARALVQSTSIPSSVAGERTTKFNGSGKTKRAVTMLCNAQSSSLTLRDFTGLRGCNAIDT
LVRSGQTLQSKVAAATYVRRPRGCRFVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDAR
VEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESNEAVG
ASVGGGTSGQKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKK
VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDP
ALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEAKELEK
ELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQITALIDKNKEVSKAESEAADTGPLVTEADIQHIVSSWTGIPVEKVSTDESDRLLKM
EETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPG
YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDLDEKD
SSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKVKEIELQVTERFRDRVVDEGYNPSYGARPLRRAI
MRLLEDSMAEKMLANEIKEGDSVIVDVDSDGNVTVLNGSSGTPSDPAPEPIPV

SignalP predicts non-secretion with a score of 0.218

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P115609 (952 Aa)

LIPFSSKPIFPFSIYILQQSPRFFWDFRSIMARALVQSTSIPSSVAGERTTKFNGSGKTKRAVTMLCNAQSSSLTLRDFTGLRGCNAIDT
LVRSGQTLQSKVAAATYVRRPRGCRFVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDAR
VEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESNEAVG
ASVGGGTSGQKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIEXGHSNLGSAAKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKK
VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDP
ALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEAKELEK
ELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQITALIDKNKEVSKAESEAADTGPLVTEADIQHIVSSWTGIPVEKVSTDESDRLLKM
EETLHTRIIGQDEAVKAIVALFDCTSWAQESQQPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGY
VGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDLDEKDS
SYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKVKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIM
RLLEDSMAEKMLANEIKEGDSVIVDVDSDGNVTVLNGSSGTPSDPAPEPIPV

SignalP predicts non-secretion with a score of 0.218

IPR003593 AAA ATPase
IPR003959 AAA ATPase, central region
IPR013093 ATPase AAA-2
IPR001093 IMP dehydrogenase/GMP reductase
IPR001943 UvrB/UvrC protein
IPR001270 Chaperonin clpA/B
IPR004176 Clp, N terminal

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101566	Clp N terminal - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein metabolism (GO:0019538)	72
2	118715	Clp N terminal - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein metabolism (GO:0019538)	34
5	129182	Clp N terminal - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein metabolism (GO:0019538)	33

Preceding Unigenes (2)

Unigene	Build
SGN-U213178	Lycopersicon Combined #3
SGN-U229064	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: