Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U577358 and SGN-U581429 in the current build, Tomato 200607 #2

Unigene SGN-U312918

Unigene Basic Information

Unigene ID:	SGN-U312918
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312918
mRNA sequence:	Length: 809 bp

>SGN-U312918 Tomato 200607 #1 (66 members)
TGGCTCTCCACTGCATATTAGGGTTTTTGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAG
CAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAAT
CGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTACATATATTGACAAGAAATGCCCATTCACTGGC
AATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACAT
TATGTCAAGAAGTATCAGAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCAT
GTTACTATTGGACAGTGCAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAA
AAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATT
TTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGC
CCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTGAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (21)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	3
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	4
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	12
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEE	seeds and maturing carpels 5 days post-anthesis to fruit over-ripe stage	547	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	5
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	4
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	6
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	5
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	5
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	6
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1

mRNA member sequences (66)

Alignment image suppressed for unigene with 66 aligned sequences.
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Markers Information (0)

Expression Data (9)

Annotations (manual: 4 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102458	Nucleic acid-binding OB-fold subgroup Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Ribosomal protein S17 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	14
2	119613	Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup Ribosomal protein S17 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	14
5	129936	Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup Ribosomal protein S17 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	14

Preceding Unigenes (1)

Unigene	Build
SGN-U213250	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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