Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U580887 and SGN-U593391 in the current build, Tomato 200607 #2

Unigene SGN-U313122

Unigene Basic Information

Unigene ID:	SGN-U313122
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313122
mRNA sequence:	Length: 1120 bp

>SGN-U313122 Tomato 200607 #1 (104 members)
AATCGGCCGAATTGCTCTTTCGCAGCCCTAGAACCTTCTTGAGAGAACCCCTTTTTGTATTCTTTAGCTTTCTCTCTCTAGAAGAATTTC
TCTTTTTTCCCCTCTCTCTCTCTGAAGTAGTATGGCTTCACAAGCTAGTCTTCTCCTTCAGAAACAACTTAAGGATCTCTGTAAACACCC
AGTTGATGGATTTTCGGCTGGTTTGGTTGATGAAAGCAACTTGTTTGAATGGAGTGTCACCATTATTGGACCTCAAGATACTTTATATGA
AGGGGGTTTCTTTAATGCTATCATGAGCTTTCCTGAAAATTATCCCAACAGTCCTCCAACTGTAAGGTTTACCACAGAGATCTGGCATCC
AAATGTTTACTCTGATGGGAAGGTTTGCATCTCAATTCTTCACCCCCCTGGTGATGATCCAAATGGCTATGAGTGTGCTAATGAGCGTTG
GTCTCCTGTCCACACGGTGGAGAGTATAATTTTGAGCATCATATCCATGCTTTCAAGTCCTAATGATGAGTCCCCTGCTAACGTGGAAGC
TGCTAAGGAATGGAGGGAAAAAAGGGATGAATTCAAGAAAAGGGTCAGTCGTTGTGTAAGACGGTCACAAGAAATGTAGTGAACACAGAA
ATGTACCAATGCATTTTATGATAAAGCTGATAAAATGGCTTATCATCGTTCTTTTGGCTGGATGTTCATTGCTACAAAGTGTAGAATTTG
TCAACCGTTAGACATTGTGTATTGTGCCTTTCTAGTCTTACTTTGAAGGTTCATTGCCAGTTATATTTCTTGGAAAAACTTTATAGGTTG
CTGAACTTTGTGATCTTTGGCCTTCTCTTTTTTTTTTTATGTTATATCAAGCTTTATGTCTCTTCCACCCCAGAAGTGAAAGAAGGCACA
TTAATGAAAAAAAGTGGATGGGTTGATATTTGGTTGTAATATATCAAGTCATATTTTCCCATTGTAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTGGGGGGGGGGGGCCCCCCCCCCCCCCCCCCCCAGG
GGGGGGTTTTATATTTTGGGGGGGGCGTTTTTAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (23)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	13
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	14
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	8
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	4
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	8
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	14
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	5
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	6
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	3
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	4
Solanum lycopersicum	cTOS	suspension cultures	8026	5
Solanum lycopersicum	cTSB	seed	1880	3
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	2

mRNA member sequences (104)

Alignment image suppressed for unigene with 104 aligned sequences.
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Markers Information (0)

Expression Data (6)

Annotations (manual: 1 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101402	Ubiquitin-conjugating enzyme E2 - Molecular Function: ubiquitin-protein ligase activity (GO:0004842) - Biological Process: protein modification (GO:0006464) - Biological Process: ubiquitin cycle (GO:0006512)	283
2	118431	Ubiquitin-conjugating enzyme E2 - Molecular Function: ubiquitin-protein ligase activity (GO:0004842) - Biological Process: protein modification (GO:0006464) - Biological Process: ubiquitin cycle (GO:0006512)	197
5	128961	Ubiquitin-conjugating enzyme E2 - Molecular Function: ubiquitin-protein ligase activity (GO:0004842) - Biological Process: protein modification (GO:0006464) - Biological Process: ubiquitin cycle (GO:0006512)	109

Preceding Unigenes (1)

Unigene	Build
SGN-U213409	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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