Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U568367, SGN-U568368, SGN-U568369, and SGN-U568373 in the current build, Tomato 200607 #2

Unigene SGN-U313185

Unigene Basic Information

Unigene ID:	SGN-U313185
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313185
mRNA sequence:	Length: 1992 bp

>SGN-U313185 Tomato 200607 #1 (80 members)
AGGCCGACCTGGGGCCTGATTTGATGAAGTGAATGCGACCAAAAAAGCAGCTCTTTGGTCCCCTCTCCTTCTCTTCTCTTCCACATTCCT
TGTGAAGAGTTGCGCCTACAAATATGGCAAACCCTCCTAAGATTTCTTCCACCTTCTTCTTCCTCTCATCATCCTCTTCCTCTTCCTCTT
CCTCTTCCACCTTCAAACTTGCTGACTTTTCTAACTTTATTCTTTGACATTTATAATACAGATCTCTATCTTCTTCATTCAATACATACA
CAATACAATACCAAATACAAGATTAATAATATTCTTTCTGCCTAACCTTAAATCTTTGTTTATCAGGTTGAATCTTTTATACAAGGAATA
CTTACTTACATCTATGGGAGAAGCACCAGCTTTCTTTGCTGATAGTCTCTTGGGAGATTTTCCAAATGGGATCGATTTGAAATCTAAAGG
CCACAAAACAGCTATTTCTATCGGCTCTAAAATTTATGTGATTGGCGGGGCTGATCATGAGTCGACAGCGGTAATTGGAGTTCAAATATT
TGAGAAATCTAGTGGGGAATGGATAAACCCCACTGTGCTGGGTACTAAACCCAAGGTCTCAAATGGCCACTCAGCTGTGCTTTTAAATGG
TGATCGTATATTGGTTATTAAGGGCAATTCCAAGTCTGATGAATGCTTTTGGTTTCTTGAGGTGGGCACCTCATTTATAAGAGAACAGGA
AAAGACATATGGAACTGAGGTGGTTGCCTGGAGTAAGGGAGTTTTAGGTAATGTGGAGAAGCCTATTGTCATTAGTGGCCCTTCTGGAGT
GGGGAAGGGTACCTTGATATCTGAACTAATGAAAGAGTTCCCATCTATGTTTGGATTTTCTGTGAGCCACACGACCCGGGCCCCAAGAGA
AAAAGAGCAGAATGGATTTCATTACCATTTCAGTGACCGCAGTGTAATGGAGAGAGAGATAAAGGATGGGAAATTCCTGGAGTTTGCTTC
TGTTCATGGTAATCTTTATGGAACCAGTGTCGAAGCAGTTGAGGTGGTTGCTGATGCTGGCAAGCGATGCATCCTTGATATTGATGTTCA
AGGTGCAAGGTCTGTGAGAGCTAGCTCTCTTGAAGCTATTTTCATTTTTATATCTCCACCATCATTTGAAGAACTTGAGAAGCGCCTTCG
TGCAAGAGCAACTGAGACTGAAGAGCAAATCCAAAAGCGTCTCCGAAATGCTAGGGCGGAACTCGAACAAGGAAACTCATCCGGTCTCTT
TGATCATATTTTGGTGAACGATGACCTAGAAAGTTGTTATGAGAATCTTAAGAACATCTTGGGTCTCACTGAAGGTGTGAAGACTGCTCA
TAAAACATATTCAGAATTAGTCGACTTGCCTGTTGAACATTTAGTCTCGAAGATTGATCAGAAGATTTTAATTAACTGTGGTGCTGGAGA
ATATGAAAAGGCATCCGATAGCATGTATGTTCTGGACTTGTCTTTGGTTAAAGGAGGGGCCCCAGGACGGACACGAGGACTAAATCTATT
TGTGACCAATCCTTCGACTGATAGAGTAAATGACGAAAATCAGCTGAGCTAACCTACCACCTTCTGGTTTCAATAATTGTTTTTCACTTC
TTACATCTCTATACGGGTAGAGAACCACAATTTGACTACGTCATATCTTACATGGATAGTTTAGTCCCTGATGCAGCTATTAAATGAGAA
ATGATTTCTAATTATTAAAAAATTGTAGGTTAGCAGCCTGAACTATTGAAAGCCTAAGATATGTAACTCTTCTACTCGAGGATTGAGCAT
GTTGGATGTAATTCTTTCAGCTTTTTCTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGTTGCTTCTGTTTATTTCATTGTT
TCCCGTGGGGAGGTATTTTTGCTTGCTCTAAGTGAAACATTTAAAACGTGACATGTAAAAATGAATGAAGTAAGGAATATTATTATTGGA
AAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (21)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	8
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	30
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	4
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	7
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	3

mRNA member sequences (80)

Alignment image suppressed for unigene with 80 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 1 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102170	Guanylate kinase Guanylate kinase/L-type calcium channel region	20
2	119411	Guanylate kinase Guanylate kinase/L-type calcium channel region Galactose oxidase central	16
5	129749	Guanylate kinase Guanylate kinase/L-type calcium channel region Galactose oxidase central	16

Preceding Unigenes (1)

Unigene	Build
SGN-U213290	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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