Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U581827 and SGN-U596119 in the current build, Tomato 200607 #2

Unigene SGN-U313813

Unigene Basic Information

Unigene ID:	SGN-U313813
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313813
mRNA sequence:	Length: 2758 bp

>SGN-U313813 Tomato 200607 #1 (56 members)
CAAAATCAATCCAAACAGAGCCTTAACAGGGCCCAAGATAGCTTCTAGTCAAAATCTTACACACAATAAACTCACCACCACAGCGGCAGC
AGTAGCAGACCGGAATCTCCTCCTTCCTCCTCCGTCTGCTCCGCCGTCTTTCTCCGATCAGCCGCCGTCCTCCTCCTTCGCTCCAAAACC
GTACTGTTAACACCGTGGTTTGGCTGTTTGTGTATCAAAATCTCAACTACCAAACAGTCAACAACTACTTATCTACTTATATACAACTAC
TTTTTCGTGTTTGTATCAGAGAGGTATAGGAAATGGAGTCGAGTTTGGAGTTGTTGAGATCGATTGAATCGGCATTGGGAGTGTCGTTGG
GGAGTGATACGGTGTTGGTGCTACTTACGACGTCGTTCGCGGTCATCGTTGGATTAGTAGTGTTCTTCTTGAAGAGATCAAGTGATCGAA
GTAAAGAAGTGAAGCCTGTGGTGTTCCCCAAGTCCTTACATGTGGAGCCGGAGGAGGAGACTGAGCTAGAACCTGGAAAAGTTAAGGTCA
CCGTATTTTTCGGTACTCAAACTGGTACTGCTGAGGGTTTTGCCAAGGCTTTATCAGAGGAGATAAAAGCAAGATATGAGAAGGCAGTTG
TGAAAGTCGTGGACATGGATGATTATGCTGCCGATGATGATATTTACGAGGAGAAACTGAAGAAAGAGACACTTGCATTTTTCATGGTGG
CAACTTACGGGGATGGAGAGCCAACTGATAATGCTGCAAGGTTTTACAAGTGGTTCACTGAGGGACAAGAACGGGGTGCATGGTTGCAGA
ACCTTAGCTATGGCGTTTTTGCCCTGGGTAATCGCCAATATGAACACTTTAACAAGATTGGGAAGGTGATAGATGAACAATTGAGTGAAC
AAGGTGCAAAACGTCTTGTGCCTGTTGGCCTTGGTGATGATGATCAGTGCATTGAAGATGATTTTTCTGCCTGGCGAGAACAGCTGTGGC
CAGAATTGGATCAAATTCTTAGAGACGAGGATGATGCAAATTCTGCTGCCACTCCATATACAGCTGCAATTCCTGAATATCGTTTGGTTA
TCCATGATACCACTATGAGTCTTGAGGATAAGCATGCAGGCATGGCTAATGGGAATACCACATATGATATCCACCACCCATGCAAAGTCA
ATGTGGCTGTTCAGAGAGAGCTTCACACACCCGAGTCTGATCGCTCATGTATACACTTGGAGTTTGATATATCTGGCACTGGGATTTCCT
ATGAAACAGGAGATCATGTGGGTGTTTATGCTGAAAATTCTGAAGATACTGTTGAGGAAGCTGCGAGATTGCTGGGGCAGTCATTAGACT
TGATATTCTCTATTCATACCGACAAGGAGGATGGTACAGCTGGAGGAGGCTCGTTACCCCCACCTTTTCCTGGTCCCTGCACTCTACGTG
CTGCACTTGCTTGTTATGCAGATCTTCTGAATCCACCGCGGAAGGCTACTTTGGTTGCATTGGCTGCCCATGCAGCTGAACCTAGTGAAG
CAGAAAAGCTCAAGTTCTTGGCATCTCCTCAGGGCAAGGATGAGTATTCTCAATGGATTGTAGTAAGTCAAAGAAGTCTTATTGAAGTAA
TGGCTGAGTTTCCATCGGCAAAGCCTCCCCTTGGTGTATTTTTTGCAGCAGTTGCCCCTCGTTTACAGCCTCGCTACTATTCAATCTCAT
CATCTCCTCGATTTGCACCCGCTAGAGTCCATGTAACCTGTGCACTAGTCTATGGTCCAACTCCCACTGGCCGAATTCATAAAGGAGTGT
GTTCAACTTGGATGAAGAGTGCAGTACCTTCGGAGAAAAGTCACAATTGCAGCTCTGCTCCCATTTTCATTAGGCCATCTAATTTCAAAT
TACCAGCCGACCCTTCAATTCCAATTGTCATGGTGGGGCCTGGGACTGGTTTGGCACCATTCAGGGGATTCCTGCAGGAAAGAGCAGCAT
TGAAGGAAGATGGCGCTCAACTTGGTCCTGCTTTACTGTTTTTCGGTTGTAGGAATCGTAGAATGGACTTTATTTATGAGGAAGAGCTTC
AGAGTTTTGTGGATCAAGGTGTAATATCAGAGCTGATTATTGCATTTTCAAGGGAAGGGTCACAGAAAGAGTATGTTCAACACAAAATGA
TGGAAAAGGCTTCCCATGTTTGGAGTTTAATCTCTCAGGAGGGATATCTATATGTATGTGGGGATGCTAAAGGGATGGCCAGAGACGTAC
ATCGTACACTCCATACCATAGTCCAGGAGCAGGAGAATGCGGACTCATCCAAAGCAGAGGCTGTTGTAAAGAAACTCCAAATGGATGGAA
GATATCTCAGGGATGTGTGGTAATGATCATCGAGGCGTTGGTTCATTTGTTTTACTCATAGCAAGCTTGCAAGGTCTTCTCATTTGCTTT
GAGTTCCATAGCTAGAAAAGATCACCATCAATATAAGTTTTGTCCAGTAGGTTGTTGTTATTGCTCTTCCATTGGAGCAGATATATGAAA
TTTTTTATTATAAGAAAAGATTTAAGTATTGATACAAAAACTTCTATATGTAGTTGGTAACAAACACAAATCAATCCCGAATCATGTTGT
AAACTGTACCAAAAGGCTTTTGTAAGAATAGCTGTACAAATGAAGGGAGGGTAGAATAAGTGTGTTGCTACACATTTATGTTGCTCTACT
TTTTATATATTGCAATATTTCTTGTGCTCTTCTTCAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (22)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	6
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	7
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	4
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTOS	suspension cultures	8026	5
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1

mRNA member sequences (56)

Alignment image suppressed for unigene with 56 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 2 | blast: 2 | go: 7 )

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P242997 (687 Aa)

EMESSLELLRSIESALGVSLGSDTVLVLLTTSFAVIVGLVVFFLKRSSDRSKEVKPVVFPKSLHVEPEEETELEPGKVKVTVFFGTQTGT
AEGFAKALSEEIKARYEKAVVKVVDMDDYAADDDIYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGQERGAWLQNLSYGVFALG
NRQYEHFNKIGKVIDEQLSEQGAKRLVPVGLGDDDQCIEDDFSAWREQLWPELDQILRDEDDANSAATPYTAAIPEYRLVIHDTTMSLED
KHAGMANGNTTYDIHHPCKVNVAVQRELHTPESDRSCIHLEFDISGTGISYETGDHVGVYAENSEDTVEEAARLLGQSLDLIFSIHTDKE
DGTAGGGSLPPPFPGPCTLRAALACYADLLNPPRKATLVALAAHAAEPSEAEKLKFLASPQGKDEYSQWIVVSQRSLIEVMAEFPSAKPP
LGVFFAAVAPRLQPRYYSISSSPRFAPARVHVTCALVYGPTPTGRIHKGVCSTWMKSAVPSEKSHNCSSAPIFIRPSNFKLPADPSIPIV
MVGPGTGLAPFRGFLQERAALKEDGAQLGPALLFFGCRNRRMDFIYEEELQSFVDQGVISELIIAFSREGSQKEYVQHKMMEKASHVWSL
ISQEGYLYVCGDAKGMARDVHRTLHTIVQEQENADSSKAEAVVKKLQMDGRYLRDVW

SignalP predicts non-secretion with a score of 0.367

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P116632 (785 Aa)

KINPNRALTGPKIASSQNLTHNKLTTTAAAVADRNLLLPPPSAPPSFSDQPPSSSFAPKPTVNTVVWLFVYQNLNYQTATTTYLLIYNYF
FVFVSERYGNGVEFGVVEMIESALGVSLGSDTVLVLLTTSFAVIVGLVVFFLKRSSDRSKEVKPVVFPKSLHVEPEEETELEPGKVKVTV
FFGTQTGTAEGFAKALSEEIKARYEKAVVKVVDMDDYAADDDIYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGQERGAWLQNL
SYGVFALGNRQYEHFNKIGKVIDEQLSEQGAKRLVPVGLGDDDQCIEDDFSAWREQLWPELDQILRDEDDANSAATPYTAAIPEYRLVIH
DTTMSLEDKHAGMANGNTTYDIHHPCKVNVAVQRELHTPESDRSCIHLEFDISGTGISYETGDHVGVYAENSEDTVEEAAEIAGAALDLI
FSIHTDKEDGTAGGGSLPPPFPGPCTLRAALACYADLLNPPRKATLVALAAHAAEPSEAEKLKFLASPQGKDEYSQWIVVSQRSLIEVMA
EFPSAKPPLGVFFAAVAPRLQPRYYSISSSPRFAPARVHVTCALVYGPTPTGRIHKGVCSTWMKSAVPSEKSHNCSSAPIFIRPSNFKLP
ADPSIPIVMVGPGTGLAPFRGFLQERAALKEDGAQLGPALLFFGCRNRRMDFIYEEELQSFVDQGVISELIIAFSREGSQKEYVQHKMME
KASHVWSLISQEGYLYVCGDAKGMARDVHRTLHTIVQEQENADSSKAEAVVKKLQMDGRYLRDVW

SignalP predicts non-secretion with a score of 0.039

IPR008254 Flavodoxin/nitric oxide synthase
IPR001093 IMP dehydrogenase/GMP reductase
IPR003097 FAD-binding
IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase
IPR001433 Oxidoreductase FAD/NAD(P)-binding
IPR001094 Flavodoxin-like

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101624	Oxidoreductase FAD/NAD(P)-binding - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) Flavoprotein pyridine nucleotide cytochrome reductase - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491)	56
2	119263	Oxidoreductase FAD/NAD(P)-binding - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) Flavoprotein pyridine nucleotide cytochrome reductase - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) Flavodoxin/nitric oxide synthase - Molecular Function: FMN binding (GO:0010181) - Molecular Function: oxidoreductase activity (GO:0016491) Flavodoxin-like - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) FAD-binding - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491)	18
5	130187	Oxidoreductase FAD/NAD(P)-binding - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) Flavoprotein pyridine nucleotide cytochrome reductase - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) Flavodoxin/nitric oxide synthase - Molecular Function: FMN binding (GO:0010181) - Molecular Function: oxidoreductase activity (GO:0016491) Flavodoxin-like - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) FAD-binding - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491)	12

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (2)

Unigene	Build
SGN-U214355	Lycopersicon Combined #3
SGN-U217035	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: