Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U570017 in the current build, Tomato 200607 #2

Unigene SGN-U313989

Unigene Basic Information

Unigene ID:	SGN-U313989
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313989
mRNA sequence:	Length: 1869 bp

>SGN-U313989 Tomato 200607 #1 (45 members)
TATGGCCTTATACTAATATTTCAAAATCAACACTTTCATCCAAAATATTGTCCCTCCAAAACCACAAACTCCATTTTCACCTGTTTTCTT
CTTCTTTCCTTCAAACTCTTTTTGAAAAAAAAAATCTCATTTTTTTTTGCTTGTGATTTTTACACTTTTTTAGTTTTTTTTTAAAAAAAA
ATCTCTGCTGCAATGGCTGTAGCAGAGTTTATTCCTTCTTCTTCATCATTGACTAAAAAAGCGAGTTTTTATTCATCACAACTCTCTAAT
GTTTCAACTAAGATCTCTCATCAACGTCGATTAAGCTTTAAGCCTTTATTGAGAACTCATAATCATTCTCAAATATGTTGCTCTGTTACT
TCTAAGGAAGCTCAAGCGACGACTGTAGTGCAGACTGATGATCCAAAGAAGAAATCAGAATGCTATGGAGTTTTCTGTCTTACTTATGAT
CTCAAGGCTGAAGAAGAGACGTCTTCGTGGAAGAAAATGATTACTGTTTCTGTGTCTGGTGCTGCTGGGATGATTGCTAATCATCTTCTA
TTCAAACTTGCATCTGGTGAGGTTTTTGGGCCAGATCAACCTATTGCACTAAGGCTATTGGGGTCTGAGCGGTCAATCCAAGCGCTTGAA
GGAGTTGCTATGGAACTAGAGGACTCTTTGTATCCTTTGCTTAGGGAGGTAAATATAGGTATAGATCCCTATGAGGTGTTCCAGGATGCA
GAATGGGCACTTCTCATTGGTGCAAAGCCTCGAGGCCCCGGTATGGAACGAGCTGGCTTATTGGATATAAACGGCCAAATCTTTGCTGAA
CAGGGGAAAGCTCTCAATGCCGTTGCATCGCGAAATGTTAAAGTGATAGTTGTGGGAAACCCTTGCAATACCAATGCATTGATTTGTTTG
AAAAATGCTCCAAATATACCAGCAAAGAACTTCCACGCCTTGACGAGGTTAGATGAAAATAGAGCCAAATGCCAGCTAGCTCTAAAAGCT
GGAGTCTTTTATGACAAAGTATCTAATGTTACCATTTGGGGCAATCACTCAACAACTCAGGTTCCAGACTTTTTAAACGCTAAAATTAAT
GGATTGCCAGTCAAAGAGGTGATTAAAGACACTAAATGGTTAGAGGAAGAGTTCACTGAAAAAGTCCAAAAGAGAGGTGGTGTACTTATT
CAGAAATGGGGTAGATCTTCAGCTGCATCAACTGCTGTGTCGATTGTCGATGCAATAAGGTCTCTTGTCACTCCTACACCTGAAGGAGAT
TGGTTTTCTACTGGAGTATATACAAATGGAAATCCTTATGGAATAGCACAGGATATAGTTTTCAGTATGCCTTGTAGATCAAAAGGAGAT
GGTGATTATGAACTAGTAAAAGAAGTTATATTTGATGATTACCTTTGGAACCGTATAAAAAAGTCAGAAGATGAGTTGCTCGCGGAGAAA
AGATGTGTTGCCCATCTTACAGGAGAGGGTATCGCGGTCTGTGATCTCCCCGGAGATACGATGCTTCCCGGAGAGATGTGAAACCAGCAA
ACCATATTGTTACAAATTATGTTTTAAGAACTTGCATAGAATGCAAGTGTTTGTTTGTAATTTGTGTATCATTGATAAATCAGTCTCAAC
AAGGGAGATAATAAATGAGACACAGTATCAACATTATTCTAATCGAGTCGATTCCATGATTATAATTTCATTCCGTACTAGAGTGAACCC
CACATATGGTTACTAGCTTTGGGTACGCGCGTTGTACGTATATCCGTATTAGTTGGTATCAAAGTTTTCTATACAATTTCAACTTATATA
TTAAAAATAGATACTAAAGTGTATCGAAAATACAAGTTTCTAAAGATAAATGAGTATTCATAATAGATT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
mdh	chloroplast malate dehydrogenase (mdh)	chloroplast malate dehydrogenase

Genomic locations (0)

None

Library representation (18)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	6
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LE15	Fruit 15 days post anthesis	269	1
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	6
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	4
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	5
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	5
Solanum lycopersicum	vSlycmRNA		8362	2

mRNA member sequences (45)

Alignment image suppressed for unigene with 45 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101478	Lactate/malate dehydrogenase - Biological Process: tricarboxylic acid cycle intermediate metabolism (GO:0006100) - Molecular Function: oxidoreductase activity (GO:0016491)	110
2	118552	2Fe-2S Ferredoxin-like fold - Molecular Function: electron transporter activity (GO:0005489) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) Ferredoxin - Molecular Function: electron transporter activity (GO:0005489) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) Ferredoxin [2Fe-2S] plant - Molecular Function: electron transporter activity (GO:0005489) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118)	56
5	130534	Malate dehydrogenase - Biological Process: malate metabolism (GO:0006108) - Molecular Function: malate dehydrogenase activity (GO:0016615) Malate dehydrogenase NADP-dependent plants and bacteria Lactate/malate dehydrogenase - Biological Process: tricarboxylic acid cycle intermediate metabolism (GO:0006100) - Molecular Function: oxidoreductase activity (GO:0016491) Malate dehydrogenase NAD or NADP - Biological Process: malate metabolism (GO:0006108) - Molecular Function: malate dehydrogenase activity (GO:0016615) Malate dehydrogenase NADP-dependent plants - Biological Process: malate metabolism (GO:0006108) - Molecular Function: malate dehydrogenase (NADP+) activity (GO:0046554) Malate dehydrogenase active site - Biological Process: malate metabolism (GO:0006108) - Molecular Function: malate dehydrogenase activity (GO:0016615)	10

Preceding Unigenes (1)

Unigene	Build
SGN-U214051	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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