Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U581654 in the current build, Tomato 200607 #2

Unigene SGN-U314048

Unigene Basic Information

Unigene ID:	SGN-U314048
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314048
mRNA sequence:	Length: 1245 bp

>SGN-U314048 Tomato 200607 #1 (56 members)
CGAAATGGGCTAAACTTGTTTGACCCGCCTCTTTTAGCTCCAAGTTCCAATAACCAATTGAAGCCTCACGGTAGTGTCTCCGTTTCTAGT
TTTTCTAAAAATCTTATCCTCATTGTCGATCGGTTCTCCAATGGCGAAGCCAATCGTTGACACGGAGTACATCAAAGAAATCGAGAAAGC
TCGTCGAGACCTCCGCGCTCTCATCTCCAACAAAAGCTGTGCTCCGATCATGCTTCGCTTAGCGTGGCACGATGCAGGAACCTATGATGC
TAAATCTAAGACTGGTGGACCCAATGGTTCTATCAGAAATGAGGAAGAGTTCACTCACGGTGCTAATAATGGCTTGAAAATCGCTCTTGA
TTTTTGCGAAGCAGTTAAGTCTAAACATCCAAAGATTACGTATGCAGATCTATACCAGCTTGCAGGTGTTGTTGCAGTTGAGGTGACTGG
TGGTCCGACTATTGAATTTGTCCCTGGTAGGAAGGATTCCAGTGTTTCTCCAAAGGAAGGGCGGTTACCAGATGCTAAACAAGGTGTGCC
GCATCTTAAAGACGTATTTTATAGGATGGGTTTGTCTGACAAAGATATAGTGGCTCTATCAGGGGGTCATACACTAGGAAGGGCACATCC
AGAGAGATCAGGCTTTGATGGTCCATGGACAAAGGAGCCACTGAAATTTGACAATTCATATTTTGTGGAGCTGCTTAAGGGGGAAAGCGA
GGGATTACTGAAACTTCCCACAGACATTGCTTTATTGGATGATCCTGAGTTCAGACATTATGTTGAGCTGTATGCTAAGGATGAAGATGC
CTTCTTTAGGGATTACGCCATATCACACAAGAAGCTGTCTGAGCTAGGGTTTACCCCAAGTTCTGGTTCCAAGGCTACGGTGAGGGATGG
TACTATTTTAGCACAGAGTGCTGTAGGTGTTGTTGTGGCTGCTGCAGTGGTGGCTCTGAGTTATTGGTATGAAGTGCGGAAAAGGATGAA
GTAAATTGCAGCAGGACTGGTTGCATTCTTACTTGCATATTATTCACCAATCTCGTACCCGTTATTGATTAAGCGTACCTATTCTCTTCC
CCCAAATAAAAACATGTAATGTCGACTATACAAAAATATAGTAACGAATTGGTTGTACCCGTGTTTATATTTGATACCCATACTTTTGGA
AGGGTTTTGATTTCTAAAAAAAAAAAAAATCGTATCAGATGATTTTTGCGTTAGGAATTTGACATAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (26)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	5
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	4
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	6
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTSC	seed	2256	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (56)

Alignment image suppressed for unigene with 56 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (5)

Annotations (manual: 1 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101394	Haem peroxidase plant/fungal/bacterial - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979) Haem peroxidase	328
2	118594	Plant ascorbate peroxidase - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979) Haem peroxidase Haem peroxidase plant/fungal/bacterial - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979)	46
5	129165	Plant ascorbate peroxidase - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979) Haem peroxidase Haem peroxidase plant/fungal/bacterial - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979)	34

Preceding Unigenes (1)

Unigene	Build
SGN-U214077	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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