Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U567167 in the current build, Tomato 200607 #2

Unigene SGN-U314139

Unigene Basic Information

Unigene ID:	SGN-U314139
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314139
mRNA sequence:	Length: 2707 bp

>SGN-U314139 Tomato 200607 #1 (53 members)
TTCAACAAGATGCTGTACAAGTATCATTTTGTCAGCATTCAATGTTGCCTAATCTATTTAGGAAGAGTATTCAATCTTCTCTTTTAATTT
TTTTCTGAAACCCCATTTTATAACAAGTCTTTTGAGACCTAATTCTTTGTACTTGAATTTGGGGTGTGAAGATAGAGACTTGGGTCATTG
ATAAAAATGGCGGCAGGAACTGTTCCAGCTTCATTTACAGGCTTGAAGAGCAATGAAAATGGTTTGGGGTTCGCAAAAAGTATGAACTTT
ATAAGAGTTTCCGACTTACAGAGGGTTAAGTTCCGGCGAACAAAATTTTCTGTGATAAGAAATGCAAATCCTGGTCAAGAAACCATTGAA
CTTCAGCCTGCATCCGAAGGGAGTCCACTACTAGTTCCTAGGCAAAAATATTGTGAATCCATATACAAAACTGTCAGAAGACAGACCTGC
ACTGTGATGGTTGGGAACGTGGCTCTTGGTAGCGAACATCCAATTAGAATTCAAACAATGACCACAACTGATACCAAAGATGTCGCTGCA
ACAGTAGAACAGGTGATGAAAATTGCTGATGCGGGAGCTGACATAGTTCGGATTACAGTCCAAGGGAGGAAAGAAGCTGATGCATGTTTT
GAAATTAAAAATACTCTGGTGCAAAAGAATTACAACATCCCTCTGGTGGCTGACATTCATTTTGCTCCTTCTGTTGCACTTCGAGTGGCT
GAGTGCTTTGACAAAATACGTGTCAATCCTGGAAACTTTGCTGACAGGCGAGCCCAGTTTGAGCAATTAGAGTACACAGAAGATGACTAT
CAGAAAGAACTCGAGCATATTGAGGAGGTCTTTACACCATTGGTGGAAAAATGTAAGAAGTATGGACGTGCAATGCGCATTGGGACAAAC
CATGGGAGCCTTTCAGATCGCATTATGAGCTATTATGGGGACTCACCTAGGGGAATGGTAGAATCAGCATTTGAGTTTGCCAGAATTTGT
AGAAAGTTGGACTTCCACAATTTTGTCTTCTCAATGAAAGCTAGCAATCCAGTAGTTATGGTTCAGGCGTATCGCCTTCTTGTAGCTGAG
ATGTATGTTCAAGGATGGGATTATCCTTTACACTTGGGAGTTACTGAAGCTGGTGAAGGTGAGGATGGAAGGATGAAGTCTGCAATCGGA
ATTGGCACACTTCTTCAGGATGGTTTGGGTGATACGATACGGGTTTCCCTAACTGAAGCTCCAGAAGAGGAGATAGATCCCTGTCGACGA
TTGGCAGACCTTGGTAAAAGAGCAGCTGCGCTTCAGCAAGGAGTGGCCCCCTTTGAAGAAAAGCACAGACGTTATTTTGACTTTCAACGT
AGGTCAGGGGAATTGCCAGCTCAAAAGGAGGGTGATGAAGTAGACTACAGAGGCGTGTTGCATCGAGATGGTTCTGTTCTTATGTCTGTC
TCTTTGAATCAATTAAAGACCCCTGAACTTTTGTACAGATCATTAGCGGCAAAGCTTATTGTTGGCATGCCATTTAAGGATTTGGCAACT
GTGGACTCAATCCTGTTGAGGGAACTTCCACCACTAGATGATATAGATTCTCGTCTAGCTCTCAAGAGATTGGTCGACATAAGCATGGGA
GTCATTGCTCCTCTCTCAGAGCAATTGACAAAGCCATTACCCAATGCCATGGTCTTGGTTACTCTGAAGGAGTTGTCTGGTGGTGCTCAC
AAGCTTCTTCCCGAAGGTACGAGATTGGTTGTGTCTCTGCGTGGCGATGAATCACATGATGAGTTGGAAATCCTGAAGAGCTCTGATGTT
ACAATGATTCTTCATAATCTGCCATATACAGAGGAAAAAATTGGCAGGGTTCAAGCAGCCAGGAGGCTTTTTGAGTATCTTTCCGAGAAT
TCCTTGAACTTTCCAGTGATTCATCACATACAATTTCCCAGCAACACCCACAGAGATGACTTAGTGATTGGTGCCGGGACAAATGCGGGA
GCCCTCTTGGTAGATGGGCTTGGTGATGGACTTCTCTTGGAAGCTCCAGACAAGGATTTTGATTTTCTCAGAAATACATCTTTCAATTTG
CTTCAAGGTTGCAGAATGCGGAACACAAAAACGGAATATGTATCATGCCCATCCTGTGGCAGAACTTTATTCGATCTTCAAGAGATAAGC
GCTCAAATTAGAGAGAAGACGTCACACTTGCCTGGTGTTTCAATTGCCATCATGGGTTGCATTGTGAATGGACCTGGGGAGATGGCTGAT
GCTGACTTTGGATATGTTGGTGGTGCTCCTGGAAAGATTGACCTTTACGTCGGCAAGACAGTGGTGAAACGCGCTATTGAAATGGAGCAT
GCAACGGATGCACTGATCCAGCTAATCAAAGATCATGACCGCTGGGTTGATCCTCCTACCGAGGAGTAAGACTAGATCGCCGAGTTCAAG
AGATGGAAATGATGCAGATTATATCAACTGGATAATAATACAACTAGCATAGCTACTCCAGAGAGCTGCCATTTCCAAGCAGCAGAGATT
ATATCTTTTTATATGTTGTAGAATTTTATGTATCATGCAAAATGAAGAACATGGTTTATTACATGTATCAATGAATACAAGCTCCTAGTC
CCCTTTTTGGGTAATCTAAAAAAAAAAAAAAAATGGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNTTTGGGGGGGG
GGGGGGG

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
gcpe	GcpE

Genomic locations (0)

None

Library representation (21)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	4
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	6
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	5
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	6
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	5

mRNA member sequences (53)

Alignment image suppressed for unigene with 53 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 0 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	104074	Histone-fold IspG protein - Biological Process: terpenoid biosynthesis (GO:0016114)	5
2	122763	Histone-fold IspG protein - Biological Process: terpenoid biosynthesis (GO:0016114)	5
5	132948	Histone-fold IspG protein - Biological Process: terpenoid biosynthesis (GO:0016114)	5

Preceding Unigenes (1)

Unigene	Build
SGN-U214196	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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