Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U578229 in the current build, Tomato 200607 #2

Unigene SGN-U314881

Unigene Basic Information

Unigene ID:	SGN-U314881
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314881
mRNA sequence:	Length: 1303 bp

>SGN-U314881 Tomato 200607 #1 (56 members)
TCCTCAGATTTGCGGTAACAATTGTAGGTATCCACCTGAGTTAAAGGGTTAATTCAAGACCCTGTTTTGTATTGTGGCCTATAAATAGAC
AAGGTTTAGTTATGGCAGATGAGTGTGCTGCTTTTATGAAGGGAACTGAATTGCCAGTGAAGAGGCCAAGAGAGGAAGAAGCAGAAACAG
AGATGGAGGCAGCCAATAACAGCAACAATGGTTGTGAGAAAGAGGAGTCATCTCCTTATATCTCTTCTGTTTTACCTGGATGGTTCTCTG
AGATTAGCCCCCTTTGGCCTGGGGAAGCACACTCATTGAAGGTTGAGAAGATATTGTTTCAGGGGAAGTCTGATTACCAGAATGTCTTGG
TTTTTCAGTCATCAACTTATGGGAAGGTGCTTGTTTTGGATGGTGTGATCCAACTTACAGAGAGGGATGAATGTGCTTATCAAGAGATGA
TCACTCATCTTCCTCTTTGTTCAATTCCCAACCCTAAAAAGGTGCTGGTTATTGGAGGAGGAGATGGTGGTGTCCTGCGTGAGGTATCCC
GTCACTCTTCTGTCGAACAGATCGACATATGTGAGATTGACAAAATGGTAGTTGAGGTTGCTAAACAATTTTTCCCAGATGTAGCTGTAG
GATATGAGGATCCACGTGTGAATCTCCACATTGGTGACGGAGTTGCATTTTTGAAAAATGTACCTGCCGGAACTTACGATGCTGTCATAG
TGGATTCATCTGACCCTATCGGTCCAGCGCAAGAGTTGTTTGAAAAGCCTTTCTTTGAATCTATAGCAAAGGCTCTTCGTCCTGGAGGGG
TTGTATCTACGCAGGCTGAGAGCATATGGCTTCACATGCACATCATTGAAGAAATTGTTGCTAATTGCCGCCAGATCTTCAAAGGCTCTG
TCAACTATGCATGGACTACTGTTCCTACTTATCCAAGTGGCATGATTGGTTTCATGCTCTGCTCTACTGAGGGACCTGCAGTTGATTTCA
AGAACCCTATTAACCCCATCGACGATGAATCCCCTGCCAAGTCCATTGAACCTTTGAAGTTTTACAACTCTGAGATTCACCAAGCATCAT
TCTGTTTGCCATCATTCGCCAAGAGGGTGATCGAAACCAAAGGAAAATAATTTCGAAGGAGTGCTGAGTTAGTTGTACTACGCCCTATAG
TTATCGCAGTTCTTTTTTTTTTTATAAATTAAAGACAATGTTTTTAGGTTATTTAAGCCAAATGGGGTTGAATGATGGATTATAATTTCA
TCTTTGATATAATATTCTAGTTTGTTTAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
spdsyn	spermidine synthase	spermidine synthase

Genomic locations (0)

None

Library representation (27)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	2
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	6
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	5
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	5
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	5
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	5
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (56)

Alignment image suppressed for unigene with 56 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101570	SAM (and some other nucleotide) binding motif - Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757)	71
2	118681	Spermine synthase - Molecular Function: catalytic activity (GO:0003824) SAM (and some other nucleotide) binding motif - Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757)	36
5	129206	Spermine synthase - Molecular Function: catalytic activity (GO:0003824) SAM (and some other nucleotide) binding motif - Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757)	31

Preceding Unigenes (2)

Unigene	Build
SGN-U213715	Lycopersicon Combined #3
SGN-U241459	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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