Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U581443 in the current build, Tomato 200607 #2

Unigene SGN-U315044

Unigene Basic Information

Unigene ID:	SGN-U315044
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315044
mRNA sequence:	Length: 1344 bp

>SGN-U315044 Tomato 200607 #1 (47 members)
GGTAAAAGAAAAAAAGAAAAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACA
GTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAA
TATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTTGTGGGATCT
GCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGTAC
GATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGAT
AAAGGACAATTGGTACCAAACGAGATAGTTGTAACGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTA
GATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTACCTGAAGAGATA
CTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATC
GCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTC
TCAATGTACAAAGATACTATATTCCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTT
CTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATC
ATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTAT
CTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCCAGCTCGCTAGTGATATTGTTAGCTTC
GAGTTTACACCTATCCGGCTTTAAGATCGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTATTTTTGCCTAT
TTGGGACTCTTAATCATGGACATAAATACCCAGATTTCTGATTAATCCAACTTCTGAAGTTTCCAATCACAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	4
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	7
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	14
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	4
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (47)

Alignment image suppressed for unigene with 47 aligned sequences.
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Markers Information (0)

Expression Data (7)

Annotations (manual: 0 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (2)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101693	Adenylate kinase - Molecular Function: ATP binding (GO:0005524) - Biological Process: nucleobase nucleoside nucleotide and nucleic acid metabolism (GO:0006139) - Molecular Function: nucleotide kinase activity (GO:0019201) Adenylate/cytidine kinase N-terminal - Molecular Function: ATP binding (GO:0005524) - Molecular Function: nucleotide kinase activity (GO:0019201)	46
2	119522	Adenylate kinase - Molecular Function: ATP binding (GO:0005524) - Biological Process: nucleobase nucleoside nucleotide and nucleic acid metabolism (GO:0006139) - Molecular Function: nucleotide kinase activity (GO:0019201) Adenylate/cytidine kinase N-terminal - Molecular Function: ATP binding (GO:0005524) - Molecular Function: nucleotide kinase activity (GO:0019201) Adenylate kinase subfamily - Molecular Function: ATP binding (GO:0005524) - Biological Process: nucleobase nucleoside nucleotide and nucleic acid metabolism (GO:0006139) - Molecular Function: phosphotransferase activity phosphate group as acceptor (GO:0016776) - Molecular Function: nucleotide kinase activity (GO:0019201)	15

Preceding Unigenes (1)

Unigene	Build
SGN-U214264	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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