Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U572085 and SGN-U572089 in the current build, Tomato 200607 #2

Unigene SGN-U315265

Unigene Basic Information

Unigene ID:	SGN-U315265
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315265
mRNA sequence:	Length: 1374 bp

>SGN-U315265 Tomato 200607 #1 (26 members)
TGGGATGCAGCATAGACGTATGAGAATCACAACTCAGATTTAGCAATTCAACAACTCTCTGTCTCAAAGTCTCATCTCTCTCTAACTAAG
GGAGAGAGAGAATGGATACTGTGTTTTCAGTGGATGAGATTGCCGATCAATTATGGTCATCGCCGCCACCGATGAGGTTATCTCATGACT
TGGATTCTTCTTCCGCCACTTCGTCCTCTAAAATGATGAACAGGAGCTCGTCGGAGTGGGCTTTTCAGCGTTTCCTTCAGGAGGCTGCAG
CAGCTGAAACTACTTCCTCGTCTTCTTCACAGCAGATCAAGCTTAATCATAATTTAATTCCTGATCAATCGAAGCCTGTGTCATCGTTTG
TCTCTGAACCTCCGATTGATTCCGATGAACATCAGGCTTTCCTCAAAAGACGCCTGGATTTGGCATGTGCCGCCTTCGCTTTGAATCGTG
CAAGCTATATAAAATCTCAAGATTCGGCTTCTTTGCCACCCGAAAAAGGATCACTGGCAGCTAATGCATCACTCTGTGGATCTCAACTTC
CTCCAAAAGGATCTGGGCAAGAATTGGCAAAAGTTCAAGATAAGGATGCTGGTGAGCCAATTGGAATACCTCCCTTGCCTGCATTGCAGA
AGAAACCTGGTATCCAGGTAAGGTCAACGACAAGCGGTTCATCCGGAGAGCAATCAGAAGATGATGAAGCTGAAGGAGAAGCAGAAACAA
CTCAATCAACTGATCCAACTGATGTGAAACGTGTGAGGAGAATGCTATCCAATAGAGAATCAGCTAGACGCTCGAGAAGAAGAAAACAAG
CCCATCTGACAGAACTAGAGACGCAGGTCTCTCAAGTAAGAGTAGAAAACTCCTCTTTATTGAAACGCTTGACTGACATAAGCCAGAAGT
ACAATGAAGCAGCAGTTGACAATAGAGTATTGAAAGCCGATGTTGAGACATTGAGAGCAAAGGTGAAGATGGCTGAAGAAACTGTTAAAA
GAGTTACTGGGTTGAATCCTCTATTCCAAGCTATGTCTGAGATATCGACAGTAATGATGCCATCTTTCACTAGTAGTCCTTTCGACTCAT
CAGCAGACGCTGCTGTCCCTGAACATGATGACCTGAACTATCCAGCGCCTGAAAATGGTCATATGCCCAACCATGATTGTAGAATGCAAA
ACGCGAGAGGCTAGGTTGGAGCATCTGCAGAAGCGCATCTGCGGAGAAGCAAGTACTTGTGGAAACCAAGGCAAGGGAGAGAAGTAGAAT
GACTTAATGAGCAGAAGTTACGGCAAGGAAGATTTCACAGAGATCTGTAAATCTTACATATCAAATTACTTTGAAATAATTAATCTTTTT
TTTCTTCAGATAGAGTCTATCTGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	2
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	7
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2

mRNA member sequences (26)

Alignment image suppressed for unigene with 26 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (7)

Annotations (manual: 4 | blast: 2 | go: 7 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101428	Basic-leucine zipper (bZIP) transcription factor - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) - Molecular Function: protein dimerization activity (GO:0046983)	192
2	118865	Eukaryotic transcription factor DNA-binding Basic-leucine zipper (bZIP) transcription factor - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) - Molecular Function: protein dimerization activity (GO:0046983)	27
5	130506	Eukaryotic transcription factor DNA-binding bZIP transcription factor bZIP_1 - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) - Molecular Function: protein dimerization activity (GO:0046983) Basic-leucine zipper (bZIP) transcription factor - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) - Molecular Function: protein dimerization activity (GO:0046983)	10

Preceding Unigenes (1)

Unigene	Build
SGN-U214344	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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