Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U566414 in the current build, Tomato 200607 #2

Unigene SGN-U315530

Unigene Basic Information

Unigene ID:	SGN-U315530
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315530
mRNA sequence:	Length: 1715 bp

>SGN-U315530 Tomato 200607 #1 (35 members)
TTTACAGGGATCTATACGTTTCTTGGTCCTCAAGTCGAGAGGTCACTCGGATATCAGAAATCAGTTCAGATCTTTGAGCTTAAGCGCCAT
GGCGACCGAAGAAGACGCCGTCCGACGCCGTACTGCACTCGCCGATTATCGGAAAAAGCTCCTTCAGCACAAGGAGCTTGATGCTCGGGT
TCGGACAGTGAGAGAGAACTTGCGGGCTACCAAAAAGGAATATGCTAAAACAGAAGATGATTTGAAGTCACTTCAAAGTGTTGGACAGAT
CATAGGAGAAGTGCTCCGACCTCTAGATAATGAGCGTTTGATAGTAAAAGCTAGCAGTGGTCCGAGGTATGTAGTTGGCTGTCGCAGTAA
AGTGGACAAGGAAAAACTGACTTCAGGCACAAGAGTGGTTCTCGATATGACAACACTTACAATCATGCGGGCACTCCCCCGTGAAGTTGA
TCCTGTTGTATACAACATGCTTCATGAAGATCCTGGCAACATCAGTTACTCTGCCGTGGGTGGACTGTCAGATCAGATCAGGGAGCTGAG
AGAATCCATTGAGTTACCTCTAATGAACCCTGAGCTTTTCCTCCGGGTTGGGATTAAGCCTCCAAAGGGTGTTCTTCTCTACGGGCCTCC
TGGAACAGGCAAGACATTGTTAGCCAGGGCAATCGCTAGCAACATAGATGCCAATTTCTTAAAGGTTGTATCAAGTGCCATTATTGATAA
GTACATTGGTGAGAGTGCAAGATTAATTCGGGAAATGTTTAACTATGCGCGTGATCACCAACCTTGCATCATATTCATGGATGAGATAGA
TGCAATTGGTGGACGTCGTTTTAGTGAGGGAACCAGTGCAGACCGTGAAATCCAAAGAACGCTCATGGAGTTGCTCAATCAGTTGGATGG
ATTTGACCAGCTTGGAAAGGTAAAAATGATTATGGCAACAAATAGACCTGATGTTTTGGACCCAGCTCTTCTTCGTCCTGGTCGATTAGA
TAGAAAGATAGAAATCCCCTTGCCTAATGAACAATCAAGAATGGAAATCCTCAAGATCCATGCTGCTGGGATTGCCAAACATGGTGAAAT
TGATTATGAGGCTGCTGTTAAGCTCGCTGAGGGATTTAATGGGGCTGATATGCGGAATGTTTGCACTGAAGCTGGTATGTTTGCAATTCG
TGCAGAGCGTGATTATGTCATCCATGAGGATTTCATGAAGGCTGTAAGGAAACTGAATGAAGCAAAGAAACTTGAATCAAGTGCTCACTA
CAGTGCTGATTTTGGCAAGGAATAAGCATGTGGGTGAATGCCATGGACCAATTTCAATGGTATGATAGCGCCAGATGCGGTCTTTGGTTT
TCTGTACCATTTGAGTTTGTTTATTCTGTATTTTAAATTATGTAATGCAGCCAACTCTTTCTCTGAAAGCAGCTGCATTTCTTGTGTTTT
CATTCTCATTATGTTTTGTTGAAGGATTGGTAGAATAGAATACAATGGATGTTTATTTACTGGTTTTTGGTTGCTATGAACTGAATTCTG
ATTGGTATTAGGCCCCCCAAAAAAAGTTTAACAACCACCTAGTGTATACCAACATGTGGGTCTGGAAAGGACGGGGTGTAATATAGTAGA
GGGATCAAATCAACTCTGTTCAGCTCAGCATCTTTTGTAGTGTAATTAAAATTGAGGAAGCGCAAGTGATTAATTAATTGTGAAAAAAAA
AAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (23)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	3
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	cTSB	seed	1880	2
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (35)

Alignment image suppressed for unigene with 35 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 1 | blast: 2 | go: 8 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101385	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524)	403
2	118424	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	236
5	130410	26S proteasome subunit P45 - Cellular Component: nucleus (GO:0005634) - Cellular Component: cytoplasm (GO:0005737) - Molecular Function: hydrolase activity (GO:0016787) - Biological Process: protein catabolism (GO:0030163) AAA ATPase central region - Molecular Function: ATP binding (GO:0005524) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	10

Preceding Unigenes (1)

Unigene	Build
SGN-U214642	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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