Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U585307 and SGN-U595775 in the current build, Tomato 200607 #2

Unigene SGN-U315861

Unigene Basic Information

Unigene ID:	SGN-U315861
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315861
mRNA sequence:	Length: 2003 bp

>SGN-U315861 Tomato 200607 #1 (34 members)
TTATTTTCTCCTTGATCTATTCCTCCCTTAGTGGAAACACCGTTAGGGTTTTTCCAAATCCAGATCTCTGATACAGTTTCGAATATTATC
TTCTTCGCATAGTCCACAACGGGTTATGGAAGAAACTAGAAGGAAGATCTGGGCGCAATATGCGTTCCTGTTATTGGCTTGTTGCTTTTT
CTCTCAACTCTACGCTACTTCAGATGTGAAGTTCTACGAGTCATTTGACGAAGCATTTGATGGGCGATGGATCGTATCTGAGAAAGAGGA
CTATTCAGGTGTGTGGAAACATGCCAAGAGTGAGGGACATGATGATTATGGACTTCTTGTTAGTGAGAAGGCTAGGAAATACGCTATTGT
CAAGGAGCTTGACAATGTTGTTGACCTCAAAGATGGAACTGTGGTTCTTCAATATGAGGTTCGCCTCCAGGATGGACTTGAATGTGGTGG
TGCTTACATAAAATACCTCCGCCCCCAGGAAGCAGGGTGGACCGCAAAGGGTTTTGATAACGAGTCCCCCTACACAATAATGTTTGGACC
TGATAAATGCGGAGCCACAAACAAGGTGCACTTCATTTTGAAACACAAGAACCCTAAGAGTGGAGAATACGTTGAGCACCACCTCAAGTT
TCCTCCCTCTGTACCAGCTGACAAGCTAACTCATGTTTACACTGCTGTGTTGAAACCGGACAATGATGTTCTTATCTTGGTTGACGGAGA
AGAAAAGAAGAAGGCTAACTTCCTCTCATCTGATGATTTTGAGCCACCACTTATTCCTGCTGTGACCATTCCAGACCCAGAAGACAAGAA
GCCGGAGGACTGGGATGAGAGAGCCAAGATTCCAGACCCAGATGCTAAGAAACCTGATGATTGGGATGAGGATGCACCAATGGAAATTGA
AGATGAGGAAGCTGTAAAGCCCGAAGGATGGTTGGATGATGAGCCTGAGGATGTTGATGATCCTGAGGCTACCAAGCCTGAAGATTGGGA
TGATGAGGAGGATGGTGAATGGGAGGCTCCGAAGGTTGACAACCCAAAATGTGCAGAAGCTCCTGGTTGTGGGGAGTGGAAAAGACCAAT
GATCAGAAATCCAGTATACAAGGGAAAATGGCACGCTCCGCTTATTGACAACCCCAATTACAAGGGTATTTGGAAGCCAAGAGATATCCC
AAATCCTGACTATTTTGAACTTGACAAACCCAACTTTGAGCCTATCGCAGCCATTGGCATTGAGATCTGGACAATGCAAGATGGCATATT
GTTTGACAATATCTTGATTGCTAGTGATGAAGAAGTTGCAGAATCATACAGGAAGACTGCCTGGAAACCCAAGTTTGATGTAGAAAAGGA
GAAACAGAAAGCTGAGGAAGAAGCAGAATCTGGTGGCCTCAAAGGATACCAGAAATTAGTATTTGACCTCCTCTACAAGGTAGCTGGTAT
CCCATTCTTGGGTGAACACAAGACCAAAGTATTGGATCTTCTCGAGAAAGCTGAGAAACAGCCCAATATCACAGTTGGTGTCGTTGTCTC
AATTGTAGTGGTTGTCTTCTCAGTTCTATTGAAGCTCATTTTCGGTGGGAAGAAGCAGCAACCTGCTAGAGCTAGTGCCGAGACTGAGAA
AACTGACGGAGCTGAAACCTCGACTTCCAATAGTCAAGCCGCTGAGGAGAAGGAAGAGCAGAGTGAGGATGCTGGTGCTGCTCCTCGTCG
AAGGACTAGGCGCGACAATTAGGATGGGGAAAGGTTCTAGTGACCGCAGTCGGACTTATTTTAGATTTTTGATCTAGTAGTTGTTCCTGT
TGTTTTGATATCTTTTTCCTCTTTTCTCAAATTCTTGATGATCAAGGCAAGCAAGTTTTTCCAGCGATGTTGCTTCCCCTCAAAACAAGC
ATGTATCACAGTATTGTATATGAGACAATTTTTATCTGGATGTTATCCTCTTTTATATCATAGATTTTTAAAGAAAAAAAAAAAAAAAAA
AACTCGAAATAGTCTCTCTCTCT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
cnx	calnexin

Genomic locations (0)

None

Library representation (19)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	5
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	2

mRNA member sequences (34)

Alignment image suppressed for unigene with 34 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 1 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101840	Concanavalin A-like lectin/glucanase subgroup Calreticulin/calnexin P Calreticulin/calnexin - Molecular Function: calcium ion binding (GO:0005509) Concanavalin A-like lectin/glucanase	33
2	118723	Calreticulin/calnexin P Concanavalin A-like lectin/glucanase subgroup Calreticulin/calnexin - Molecular Function: calcium ion binding (GO:0005509) Concanavalin A-like lectin/glucanase	33
5	131071	Calreticulin/calnexin P Concanavalin A-like lectin/glucanase subgroup Calreticulin/calnexin - Molecular Function: calcium ion binding (GO:0005509) Concanavalin A-like lectin/glucanase	8

Preceding Unigenes (1)

Unigene	Build
SGN-U214876	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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