Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U576754 in the current build, Tomato 200607 #2

Unigene SGN-U315951

Unigene Basic Information

Unigene ID:	SGN-U315951
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315951
mRNA sequence:	Length: 1992 bp

>SGN-U315951 Tomato 200607 #1 (30 members)
TCAGCTCCCATTCATACTCTTCTCCTAATCGTCTCCAAAGAGTAAAATTTTATTCAGAAATGGCTTCATCTGCTTTAATTAGCGATACTC
AGTCATGGAAGGATTTGCGAGCTCATGTTGAAGAAATTAACAAAACTCATTTGCGTGATTTGTTGAATCACACTGATCGATGTCAATCAA
TGATGGTGGAGTTTGATGGGATTCTGATCGATTACTCGAGACAAAGAGCCACCCTTGATACATTGAAAAAGCTCTTCAATTTAGCTGAGG
CAGCACATGTTAAGGAGAAGATTATTCGGATGTTCAATGGAGAGCATATAAACAGCACAGAAAACAGACCCGTTCTTCATGTTGCACTGC
GTGCTCCAAGGGATGCAGTCATAAATAGTGACGGGAAGAATGTTGTTCCTGAGGTTTGGCATGTACTTGATAAGATCCGAGACTTCTCTG
AGAGGGTTCGCAGTGGTTCCTGGGTTGGAGCCACAGGAAAAGCATTGAAAGATGTTGTAGCTGTTGGTATAGGTGGCAGTTTCTTGGGCC
CTTTGTTCGTACACACAGCACTTCAAACAGAAGCGGAGGCTAGTGAGTGTGCAAGAGGGCGCCAGTTGCGATTTCTCGCGAATGTTGATC
CAATTGATGTAGCCCGAAATATAACAGGCTTGAATCCTGAAACAACTCTAGTTGTGGTGGTCTCAAAGACTTTTACTACAGCCGAGACAA
TGCTAAATGCCCGTACAATGAGGGAATGGATCTCCTCTGCATTAGGACCTCAGGCAGTTGCAAAGCATATGGTTGCAGTTAGTACCAATC
TTAAGCTCGTAGAACAATTTGGCATTGATCCAAATAATGCATTCGCTTTCTGGGACTGGGTAGGAGGTCGATTTAGTGTCTGCAGTGCAG
TTGGAGTATTGCCTCTTTCTCTGCAATATGGTTTTTCCATTGTTGAGAAATTTCTGAAGGGAGCTTCAAGTGTTGATCAGCATTTCCTCT
CAGCACCATTTGAGAAAAATATACCTGTGCTTTTAGGCTTGCTGAGTGTGTGGAATGTTTCATTCCTTGGATATCCAGCAAGAGCAATAT
TACCCTATTCTCAAGCACTGGAGAAGTTGGCACCTCATATTCAACAGGTCAGTATGGAGAGTAATGGGAAAGGGGTGTCAATTGATGGTG
TCCCTCTTCCTTATCAGACTGGTGAAATTGACTTTGGTGAACCAGGGACGAATGGCCAACACAGCTTTTACCAATTAATTCACCAGGGCC
GTGTTATTCCTTGTGATTTTATTGGTGTTGTTAAGAGTCAGCAGCCTATTTACCTAAAAGATGAAGTGGTGAATAACCATGATGAGCTCA
TGTCGAACTTCTTTGCGCAGCCAGATGCCCTTGCTTATGGGAAGACACCAGAGCAGTTGCAAAAGGAGAATATTCCTGAGCATCTTGTTT
CTCATAAGACATTTTCTGGAAATCGACCTTCTCTAAGTATACTACTTCCATCATTGTCTGCTTACAATATTGGACAGTTACTGGCCATCT
ACGAGCACAGAGTTGCAGTCCAAGGCTTCGTATGGGGTATCAATTCTTTTGATCAGTGGGGTGTGGAGCTAGGAAAGTCTCTAGCGACTC
AAGTTAGAAAGCAACTTCATGCATCTCGTAAGAAAGGAGAATCAGTTGAAGGCTTCAATTTCAGCACCAAAATGTTGATAACAAGATATC
TCGAGGCAAGTGCTGATGTTCCTTCTGATCCTTCAACTCTTCTGCCAAATATATGAGGTATGTTAAGAATCGGGTTTGATGACCACAGAT
TAACGGAGGCCTCAACTTCACTACCAAGCAAAATGAACAAATTTTAATCAATCAGTTTTGAAGTTTACATAAAAGTTTTGGTGTTGTATG
GTCACTCATCTGGGCAAACATATCGCTGCAGTTGTATCAATAAAATTCAAAGCATTTATTTCTGGTTTCATTTATAAAAATAATGGTTTT
TTAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
GPI	glucose-6-phosphate isomerase DQ451687	glucose-6-phosphate isomerase

Genomic locations (0)

None

Library representation (17)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	4
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	6
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (30)

Alignment image suppressed for unigene with 30 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102715	Phosphoglucose isomerase (PGI) - Molecular Function: glucose-6-phosphate isomerase activity (GO:0004347) - Biological Process: gluconeogenesis (GO:0006094) - Biological Process: glycolysis (GO:0006096)	11
2	121903	Phosphoglucose isomerase (PGI) - Molecular Function: glucose-6-phosphate isomerase activity (GO:0004347) - Biological Process: gluconeogenesis (GO:0006094) - Biological Process: glycolysis (GO:0006096)	6
5	132104	Phosphoglucose isomerase (PGI) - Molecular Function: glucose-6-phosphate isomerase activity (GO:0004347) - Biological Process: gluconeogenesis (GO:0006094) - Biological Process: glycolysis (GO:0006096)	6

Preceding Unigenes (1)

Unigene	Build
SGN-U214848	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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