Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U581660 in the current build, Tomato 200607 #2

Unigene SGN-U316290

Unigene Basic Information

Unigene ID:	SGN-U316290
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316290
mRNA sequence:	Length: 1131 bp

>SGN-U316290 Tomato 200607 #1 (29 members)
AAAAAAAGCAAAAAGAAAAGAGGCAAAGTTATCAAATCAAAAACCCTACTTCCTCCCTTGTTGTTCTTCTTCTTCTTCAAATCCGCCGTA
AATCTTTCTAAAACCAAAAATCTAGAGTGATGGCAAGCACTACTGTTGAACCCAAATTGGAGAAGAAAGAAGAGGAAGTAGAAGCAGAAG
TAGAAGAAAACCCAACTGGCGATGATGAAGACACTGGTGCACAAGTTGCTCCCATTGTTAGGCTACAAGAAGTTGCTGTCTCCACTGGTG
AAGAAAATGAACATGTTCTTCTTGATCTGAAATCAAAGTTATACCGATTTGACAAGGAAGGGAGTCAATGGAAAGAGAGAGGTGTTGGGA
CTGTGAAGCTTCTCAAGCACAAGGAAACTGGAAAGGTTAGGCTTGTGATGAGGCAATCCAAGACGCTGAAAATCTGTGCCAACCACTTGG
TCCTTCCTACTATGTCGATCCAAGAACATGCTGGGAATGAGAAGTCTTGTGTGTGGCATGCTGCTGACTTTGCTGATGGAGAACTGAAAG
ATGAGACTTTTTGCATCCGCTTTGCTTCAGTTGAGAATTGCAAGGCTTTCAAAGAGAAGGTTGAAGAAATTGCTGAATCTCAACAGACAA
AGTCTGGACAAAGTGAAGAAGCTGGTGCTGCTGCTACTGAACTTATTGAAAAGCTTAGTGTTGAAAGCAAAGATAAAAATGACAAACCTG
AAGACAAAGAGGCCCCTGCAGCTACAGAGGAAAAGGAAGATAAGAAGGAAGAGAAAGCTGAAGAAAAGAATTAAAATGTTTGTATTGTCG
GTCAGTTTTTTTTTTTTGAAAGGTTAATAGCATTCGTTGTTTCTGTCTGATCCAATAGATATGATAGATATAAGCAATGTGTCTCTTGTG
GTCTTATTTGTTGTTGTTGGGATGGTTTGGATTTTCATTTGGGTCTTGAGTCGAGTGCAGCTTCATGTTTTATTGTGGTCTTTGGTGTTT
CCTTGTACTTATTTATTGTGTGTTTGCAAATTTTGGTTCATGGGGGTACACCACCCAGTATAAGGGATTACGTTTGTTAAAAAAAAAAAA
AAAAAAAAAAAACTCAGACTAGTCTCTCCCGCGTGCCGAATTCGGCACGAG

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ranbp1	Ran binding protein-1

Genomic locations (0)

None

Library representation (18)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	cTOS	suspension cultures	8026	5
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1

mRNA member sequences (29)

Alignment image suppressed for unigene with 29 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101557	RanBP1 - Biological Process: intracellular transport (GO:0046907) Pleckstrin homology-type	74
2	120280	RanBP1 - Biological Process: intracellular transport (GO:0046907) Pleckstrin homology-type	9
5	130558	RanBP1 - Biological Process: intracellular transport (GO:0046907) Pleckstrin homology-type	9

Preceding Unigenes (1)

Unigene	Build
SGN-U215937	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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