Sol Genomics Network

Unigene SGN-U580516

Unigene Basic Information

Unigene ID:	SGN-U580516
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 673 bp

>SGN-U580516 Tomato 200607 #2 (61 members)
ATTGTTAGGGTTTTGGAGGTAGAGAGAGAGCAGCTGAGCAAGACCGGCAACAATGTCGAAGAGAGGTCGCGGAGGTTCCGCGGGGAACAA
GTTTAGGATGTCGCTGGGTTTGCCCGTGGCAGCCACCGTCAATTGTGCTGATAACACCGGAGCAAAGAACTTGTACATCATTTCGGTGAA
GGGTATCAAGGGAAGGCTTAACAGGTTGCCATCAGCTTGTGTGGGTGATATGGTCATGGCTACCGTGAAGAAGGGTAAGCCCGATCTCAG
GAAGAAAGTCATGCCTGCCGTCATTGTTCGTCAGCGCAAGCCATGGCGCCGAAAGGACGGTGTCTTCATGTACTTTGAAGATAATGCTGG
TGTAATTGTGAACCCCAAGGGAGAAATGAAAGGATCTGCAATTACAGGGCCAATTGGGAAAGAGTGTGCTGATCTTTGGCCAAGAATTGC
AAGTGCTGCTAATGCTATTGTGTAGAAGAGTTCCCTTGAGTAGTTTGAAATTCTTGTTTTTAACAGTTAAATTTATGTTTTTGGATATCA
GATTGTTTTCTTATTAAGAGATCAGTTTTTGCCGGTTTGAGAATTTTATATCTAGAATACATGTCTATCGCCTGTTTCTTCTATATTGTG
ATTTTGCCTTTTCAGACAAATGCTATAATCATTTCTTAATCGT

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
l17	ribosomal protein L17
Solyc06g083780	Solyc06g083780

Genomic locations (0)

None

Library representation (23)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	4
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LB	Leaf Mature leaves	3316	4
Solanum lycopersicum	LeMiToFr02	fruit	18697	2
Solanum lycopersicum	LeMiToLf01	leaf	30679	3
Solanum lycopersicum	LePU	Pericarp Turning stage of fruit ripening.	1542	2
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	3
Solanum lycopersicum	cLEE	seeds and maturing carpels 5 days post-anthesis to fruit over-ripe stage	547	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	3
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	8
Solanum lycopersicum	cTOS	suspension cultures	8026	8
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	3

mRNA member sequences (61)

Alignment image suppressed for unigene with 61 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 1 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (2)

Unigene	Build
SGN-U312735	Tomato 200607 #1
SGN-U333876	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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