Sol Genomics Network

Unigene SGN-U270107

Unigene Basic Information

Unigene ID:	SGN-U270107
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270107
mRNA sequence:	Length: 2204 bp

>SGN-U270107 Solanum tuberosum #4 (24 members)
CTCAAATACGCTAAAACCCTAGCCTCCATATCCATTTCTCTTTCAGCTCTACACTCTGCATCTGTTTTTACAGTTACACTTGCATAAAAA
AATTGTCGGCTGCTCCGGTCGCCGCCGTCAACAATGGGGAAATCAGAAAAAAAACCAGCCTCTCAGCCCCAGAAACCAGAAAAGAAGCCA
GCCGCTCAGTCACAGAAGAATTCTGCAGCCGATGATGACATGGATCCAACGCAATACTTTGAAAATAGGCTGAAAGCACTTGCAGCTGAG
AAGGAAAATGGGCAGAACCCTTACCCACACAAATTCCAAGGGGAAAACCATTTGTCTATCCCTAAATTTGTCAATAAATACGGAGTTTTA
GAGAGTGGAGTTCATTCCGAAGATGAAGTGTCCTTGACTGGAAGGATAATGAACAAACGTGCCTCTTCTGCAAAGCTGCTTTTCTATGAT
TTACATGGTGAAGGTGCCAAAGTTCAAGTCATGACAAGTGCAAGAGATTCTGTGTTGAATGAAGAAGACTTCATTAAATTTCATTCTGGT
GTGAAGCGTGGCGATATTGTTGGAATTACTGGATGTCCAGGTAAGAGTAAAAGGGGAGAGCTGAGTATTTTTCCCAAATCATTCATAGTG
TTATCTCACTGTCTTCATATGATGCCACGGCAGAAAGGTGCCCAGACAGAGACAACTAAGAATCCTGAAGCATGGGTCCCCGGAAGTGGC
CGTAATCCAGATTCATATGTGTTGAAGGATCAGGAAACACGATATAGACAGCGTTATTTGGATTTGATGCTGAACTTAGAGGTCCGCCAC
ATATTTAAGACCCGTGCAAAGATCATAACTTTTATTCGAAGCTTTCTTGATAACCGCGACTTCCTAGAGGTAGAGACCCCCATGATGAAC
ATGATTCCTGGTGGGGCAGCTGCACGTCCATTTGTGACCCACCACAATGATTTGAATATGAGGCTTTTCATGCGTATTGCTCCTGAACTA
TATCTTAAAGAGTTAGTTGTTGGTGGCTTGGATCGTGTCTATGAGATTGGGAAACAATTTAGAAACGAGGGAATTGACTTGACGCACAAT
CCTGAATTCACCACTTGCGAGTTTTATATGGCATATGCAGATTACAATGACTTGATGGAGCTAACTGAAACTATGCTAAGTGGGATGGTG
AAGGAACTTACAGGTGGCTATATAATCAAGTATCATGCGAAAGGGTTGGAGAGTGACCCTATTGAAATTGACTTCACTCCTCCCTTCAGA
AGGATTGATATGGTAGAGGAATTGGAGAAGATTGCAAACTTGAATATACCCAAGGATCTCTCTAGTGATGAAACCAACAAATATCTCATA
GATGCTTGTGCAAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAACTTGTGGGCCACTTTCTGGAGGGG
ACATGTGTTAACCCTACTTTCATTATCAACCATCCAGAGATAATGAGTCCTTTGGCGAAGTGGCACAGATCGAAACCAGGCCTGACAGAA
CGTTTTGAACTGTTTATAAACAAACATGAACTTTGTAATGCATACACTGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGAT
CAACTCAAGGACCGACAATCAGGTGATGATGAAGCTATGGCACTGGATGAGAACTTTTGCACAGCTCTTGAATATGGATTACCTCCTACT
GGTGGTTGGGGATTGGGTATTGACCGACTTGCAATGTTGTTGACAGATTCACAAAACATCAAGGAAGTTCTACTCTTTCCAGCCATGAAG
CCACAGGATGAGCCAGCTTCCAAGGAAAGCAATAAAAAACCTCAGGAGGAATCTGCCAAGCCTCAGGATGAACTTACAATGCAAGATGTG
GAAAAGCAGATTTCCGACATCAAAATGAACTGAATCAGATCATAGATATATTGAACGTTGAGTTCCTGCTGCTCCTGGAGTAGCATTTTT
GTGATACCTTTTTTTCTTTTTTTCTTTTACTATTTAATTAATGGTAATTGTCTATTGTTATGGCAAATGCTATCTTTAATTTGTTAGTAT
CAGAAACTTTACTCGTATACTTATGAATATGGTTGTATCAGTCAAATACTTTTAAGATGTATTCATTTAAAAAAAAAAAAAAAAAAAAAA
TATAAAAAAAAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	TBSK	Tuber Skin	4812	2
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	7
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	3
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (24)

Alignment image suppressed for unigene with 24 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 9 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	337	AsnS AspS_arch tRNA-synt_lys_2 tRNA_anti tRNA-synt_2	49
2	23082	GenX AsnS AspS_arch tRNA-synt_asp tRNA-synt_lys_2 tRNA_ligase_II tRNA_anti tRNA-synt_2 AspS_bact	16
5	57987	GenX AsnS AspS_arch tRNA-synt_asp tRNA-synt_lys_2 tRNA_ligase_II tRNA_anti tRNA-synt_2 tRNA-synt_2d AspS_bact	10
1.1	101603	tRNA synthetase class II (D K and N) - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418)	62
2	119606	Aminoacyl-transfer RNA synthetase class II - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) nucleic acid binding OB-fold tRNA/helicase-type - Molecular Function: nucleic acid binding (GO:0003676) tRNA synthetase class II (D K and N) - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) Lysyl-tRNA synthetase class-2 - Molecular Function: lysine-tRNA ligase activity (GO:0004824) - Molecular Function: ATP binding (GO:0005524) - Biological Process: lysyl-tRNA aminoacylation (GO:0006430) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup	14
5	131002	Aminoacyl-transfer RNA synthetase class II - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) nucleic acid binding OB-fold tRNA/helicase-type - Molecular Function: nucleic acid binding (GO:0003676) tRNA synthetase class II (D K and N) - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) Lysyl-tRNA synthetase class-2 - Molecular Function: lysine-tRNA ligase activity (GO:0004824) - Molecular Function: ATP binding (GO:0005524) - Biological Process: lysyl-tRNA aminoacylation (GO:0006430) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup	8

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U244453	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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