Sol Genomics Network

Unigene SGN-U577367

Unigene Basic Information

Unigene ID:	SGN-U577367
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1278 bp

>SGN-U577367 Tomato 200607 #2 (156 members)
GAAGTGATGGACGTTGTGCAGACAATTGGGGGTGGAAAAAGATCTGCTTATGATCCTGATGAGATTGAGGAGGAACAGCGTGAAAGGGAT
AGGAAAAACAGGCACTGACCACTCAGCACAAAGAAAGCAAAAAAAAAAAAAGAAGAAGAAAAAAGCTTCAATCTTTGTGAAAAAATGGCA
GAAAACAAGGAAGAAGATGTTAAGCTTGGAGCTAACAAGTTTAGGGAAACTCAACCATTAGGTACAGCAGCTCAAACAGACAAAGATTAC
AAAGAGCCACCACCAGCTCCATTGTTTGAACCAGGGGAGTTGTCATCATGGTCCTTTTACAGGGCTGGTATTGCAGAGTTCATGGCAACT
TTCTTGTTCTTGTATATCACAATCTTGACTGTTATGGGTCTTAAGAGATCTGATAGTTTATGTTCTTCAGTGGGTATTCAAGGGGTTGCT
TGGGCTTTTGGTGGTATGATCTTTGCTTTGGTCTACTGTACTGCTGGTATCTCAGGAGGACACATCAACCCAGCTGTGACCTTTGGTCTT
TTCTTGGCAAGGAAATTGTCCTTGACCAGGGCTGTTTTCTACATGGTGATGCAGTGCCTTGGTGCAATCTGTGGTGCTGGTGTTGTGAAG
GGCTTCATGGTAGGACCATACCAAAGACTTGGTGGTGGTGCTAATGTTGTTAACCCTGGATACACCAAGGGTGATGGCCTTGGTGCTGAA
ATTATTGGCACCTTTGTCCTTGTTTACACTGTTTTTTCAGCCACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCTATTTTGGCA
CCACTTCCTATTGGATTCGCAGTGTTCTTGGTTCATTTGGCCACCATCCCCATCACCGGAACTGGCATCAACCCCGCCAGGAGTCTTGGA
GCTGCTATCATCTACAACGACGAGCATGCATGGAATGACCACTGGATCTTCTGGGTTGGACCAATGATTGGAGCTGCTCTTGCTGCTATT
TACCACCAAATAATTATCAGAGCTATGCCATTCCACAGGTCTTAAGTTATCTGTCTTTAAACAATGGGATTCTCAAAGACTCAACAGTGT
ACTTTTGTCTTCTTTTTTTGGGGGGTTGAATGTTCAAGTTTCTCCTTCAATGTATTTGTAATGTGGATCTGTTCCTTCTGTTAAGATGTT
CTATTATGTGTGTAAATTATCAGGTTATGATAATGTAATGTACCTTATCAATGAAGGTTCTTTATTTTTAAAAAAAAAAAAAAAAAAAAA
AATAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
SlPIP1.5	plasma membrane intrinsic protein 1.5	water channel protein

Genomic locations (0)

None

Library representation (34)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	21
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	6
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LE08	Fruit 8 days post anthesis	339	1
Solanum lycopersicum	LeMiToLf01	leaf	30679	1
Solanum lycopersicum	Sl_FruitQTL	late maturation (breaker and red ripe)	663	9
Solanum lycopersicum	Sl_RootGC02	root Developing giant cell	141	1
Solanum lycopersicum	Sl_RootInf01	root and collar Three weeks old	385	2
Solanum lycopersicum	Sl_RootSSH02	root	152	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	8
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	4
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	7
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	11
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	9
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	3
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	9
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	6
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	5
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	6
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	8
Solanum lycopersicum	cTOS	suspension cultures	8026	5
Solanum lycopersicum	vSlycmRNA		8362	6
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	5
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (156)

To view details for a particular member sequence, click the SGN-E# identifier.
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Markers Information (0)

Expression Data (4)

Annotations (manual: 2 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (5)

Unigene	Build
SGN-U312697	Tomato 200607 #1
SGN-U312699	Tomato 200607 #1
SGN-U312700	Tomato 200607 #1
SGN-U333845	Tomato 200607 #1
SGN-U333847	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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