Sol Genomics Network

Unigene SGN-U578082

Unigene Basic Information

Unigene ID:	SGN-U578082
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1793 bp

>SGN-U578082 Tomato 200607 #2 (159 members)
GGTTAGGTAGAACATAGAGCTAATATATAGCAAAATTCAAAATCCATAAGTGAATCGAAACCCAATTTAATTGAAAAACATAACAAAACC
AGACATGGTAAACTAAAAATCCTTTGTTCTTTAAAAGATCAAAAAAGGAAAAGCCAGGATACACCAAAACTGACTTTGTTACCCATATAA
ACTTTTTTAACTTCCCACTCTAAAAGCAAATAATTGCCTGTTACTTCTCTAATCTCCCTTTCTCCTGAAAGAACAACCCTCGGTGAGTCT
AGCACGCCCACCAGTTGGCTGGCACAAGACCGTCTGACATCGCACCGATCATAGCATTGAATTCTCCGACGAAATTAACGATTGAAGAAT
GGCGGTGAAGAAGAGTGTCGGATCACTGAAAGAAGCAGATCTGAAAGGGAAGAGAGTATTCGTCCGAGTTGATCTCAACGTTCCATTGGA
TGATAACTTCAAAATCACTGATGACACCAGAATCCGGGCTGCTGTACCTACCATCAAGTACTTGATGCAAAATGGTGCCAGAGTCATCCT
TGCCTCTCATCTTGGTCGCCCCAAAGGTGTCACTCCAAAGTACAGCTTAAAGCCACTTGTGCCTAGACTTTCAGAACTATTGGGAATCGA
GGTCAAGATGGCAAATGATTCAGTTGGCCCAGAAGTTGAGAACTTGGTGGCTGGACTACCGGAAGGAGGAGTTGTACTTCTGGAGAATGT
GCGATTTTACAAAGAAGAGGAGAAGAATGACCCCGAGTTTGCCAAGAAGTTGGCATCTCTTGCAGATTTGTACGTCAATGATGCATTTGG
GACTGCTCACAGAGCCCATGCTTCCACGGAAGGGGTTGCTAAGGTCTTGAAACCAGCCGTTGCTGGATTCCTTATGCAAAAGGAACTTGA
CTATTTAGTTGGAGCTGTGTCAAATCCACAGAAGCCATTTGCTGCTATTGTTGGTGGTTCAAAAGTATCAAGTAAGATTGGTGTTATAGA
GTCACTCTTGGAGAAGGTTGACGTGTTGTTGCTCGGTGGAGGAATGATCTTTACTTTCTACAAGGCCCAAGGTTATGCTGTTGGATCATC
ACTAGTGGAGGAGGACAAACTTGACTTGGCAACATCTCTCATGGAGAAGGCAAAGACAAAAGGGGTATCTCTATTGCTTCCCACGGATGT
AGTGATTGCGGACAAGTTTGCTGCTGATGCGAACAGCAAGATTGTTCCGGCCTCTGAAATTCCTGATGGCTGGATGGGATTAGATATTGG
GCCTGATGCCATCAAGTCCTTTGGCAGTGCCTTGGATACCACCAAGACTATCATTTGGAATGGACCGATGGGTGTGTTTGAATTTGACAA
GTTTGCTGCTGGAACGGAGGCTATTGCAAAGAAACTGGCAGAGCTTAGTGGAAAGGGAGTGACCACCATAATAGGTGGTGGTGATTCTGT
AGCTGCTGTGGAGAAGGTAGGACTTGCAGAGAAGATGAGCCACATATCAACTGGTGGGGGTGCTAGCTTGGAGCTTCTGGAGGGGAAACA
ACTTCCTGGGGTGCTTGCCCTGGATGACGCCTAAGCAATATATGCTCTTTTTTTTTTTTTTTGCACATTCTGTTAGCTTTCATCTCTGGA
TTTTAATCTGGAGCGAGTTTGTAAAAGGTGGTGGATCATACTGTAATAAGCGCTTTCTGGGTATTCTCTCTTGTGATAAGAGAATCTTCC
ATGGTTGAGATACACTTTGAAATAACTAATGATTACTTTTTCTGTATTCGAGCTTATATATGGCCGGAGCTTTTCTCTTACAC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (33)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	16
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	10
Solanum lycopersicum	LA	Leaf Mature leaves	6589	6
Solanum lycopersicum	LC	Leaf Mature leaves	5712	3
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	Le2TR	roots 1-,2-,3-, and 4- month-old	1179	1
Solanum lycopersicum	LeMiToLf01	leaf	30679	9
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	8
Solanum lycopersicum	Sl_LeafCherry01	epidermis	226	2
Solanum lycopersicum	Sl_RootN	Roots 5 weeks	165	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	12
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	8
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	9
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	6
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	4
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	4
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	18
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	5
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	3
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	6
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	4
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	vSlycmRNA		8362	2

mRNA member sequences (159)

Alignment image suppressed for unigene with 159 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (10)

Annotations (manual: 2 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (3)

Unigene	Build
SGN-U312518	Tomato 200607 #1
SGN-U312519	Tomato 200607 #1
SGN-U312520	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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