Sol Genomics Network

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Unigene SGN-U579800

Unigene Basic Information

Unigene ID:	SGN-U579800
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 2532 bp

>SGN-U579800 Tomato 200607 #2 (236 members)
TAACCCCCTGTTTGCGATTGGCCTTGTAGCCCCGTTTTACATCTTCCAGAGACTCCATTTGTATCGGTTCACATACAGTAGCAAAGCGCC
ATTATCTTACTCTACCCCATTGGCAAACCCACAGCCACAATTTTCCAATCCTCCATTATCCCTTCTACAATTTTCTATATAAATACCCAC
ATCTCTCTGCTCTACTCCCTTATTATCAACAACAACCACCAAATTTCTTCTTTTTTTTCTTCGATAGTAGCAATCTATCAACAAAAACAG
AGACCCCATCACAAGAATCTTGGAATTTTAGTGTTGGGTTTAAGAGGAAAAGGGGTTATTGTATTTTGCAGTTTTGAGGGTAAAGCCCAG
TTTAACAAGTTGTAGACATCACGGCTATACACAAAGTAAACCGCCGACCACTTTTACATGTTCCAGCAGTACGTCGTAAGGGTTGTGTAA
CAGCTACTAACCCTGCGCCGCACGGTGGACGTGGCGCTTTGCCTTCTGAAGGTGGTAGTCCTTCCGACCTCCTCTTCCTTGCCGGCGGCG
GTTCTTTCCTCTCCTTCTCCTACTAGATATAGTTATACTTACTATAGATCTCTAGCTTATTACGTACAGTTGTATCTAGTATTCTATTGA
TTATTCGAAGAAAACACACAAAAAGAAGTAAAGATGATGCTCAAAATTAAGAGGGTTCCTACGCTTGTTTCTAACTTTCAAAAGGATGAG
GCTGATGAAATTGCTGCTCGTGGTGCTGGTTGTGGCCGGAATTGCCTCAGGAATTGCTGCCTTCCAGGTTCAAAGCTGCCACTGTATGGT
TTCAAAAATTTGAGCTACGGCAAGTCTGTCGCCGATGAAACAAAGGAATCTCCGATCGACTTTCTGGAATCCCTTGTTCTTGGGGAATGG
GAGGATCGTCAGCAGAAAGGCCTCTTTCGCTATGATGTCACTGCTTGCGAAACCAAGGTGATTCCTGGAGAATATGGTTTCGTTGCTCAA
CTGAATGAGGGAAGGCACCTCAAGAAGCGGCCAACTGAGTTTCGAGTTGATAAGGTTCTGCAGCCTTTTGATGGAAGCAAGTTCAACTTC
ACTAAGGTTGGACAGGAAGAGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCT
GAGAAATCTCCAAGTGTCGTTGCCATAAATGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCC
CAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTG
GGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATA
ACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGAT
TTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATA
TTCCTTCTCCCACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGG
GAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCA
CTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGT
TCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGT
TTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGG
CAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCA
TGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTT
CCCTATTTATTCTCATTAGGTTGTGGTCGGGCACGTTGCAACAACGGATGGTGGTTCATTTTTTGCAACTATGATCCTGTAGGCAACTGG
ATCGGACAACGTCCTTACTAAAATGATGTATACTTATGACATGTTGCTAGTATTAAATAAAATTTTCATATGAGACGTCGAGAAGTTAAA
ATTTAAGTTTGACATATGAATCAAGTCAAACTCCTATTTAAAATATTAAGGGATTAAATATTGAACATCTATAATTATTATTATTTCCCT
TTTGATGTTGCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (34)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	17
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	3
Solanum lycopersicum	LA	Leaf Mature leaves	6589	3
Solanum lycopersicum	LB	Leaf Mature leaves	3316	6
Solanum lycopersicum	LC	Leaf Mature leaves	5712	26
Solanum lycopersicum	LeMiToFr02	fruit	18697	8
Solanum lycopersicum	LeMiToLf01	leaf	30679	20
Solanum lycopersicum	LePS	root 5 weeks old plants	823	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	11
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	5
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	13
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	39
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	6
Solanum lycopersicum	cLER	leaf 4 weeks	5127	7
Solanum lycopersicum	cLES	leaf 4 weeks	5243	9
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	15
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	9
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	7
Solanum lycopersicum	cTOS	suspension cultures	8026	4
Solanum lycopersicum	cTSC	seed	2256	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (236)

Alignment image suppressed for unigene with 236 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (1)

Unigene	Build
SGN-U312646	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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