Sol Genomics Network

Unigene SGN-U269634

Unigene Basic Information

Unigene ID:	SGN-U269634
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269634
mRNA sequence:	Length: 1680 bp

>SGN-U269634 Solanum tuberosum #4 (31 members)
AGAGAACTAGTCTTTGTTCTTTTCTTTTTTCTCTTTTGGTATTTGGTGTACAGAAGAGCGTAGAAAGTTCCCGTAATAATCGTTTTGCGA
ATCGCGATCATCGTCGTCTCCTTTCTCCGGCGTAACTAGGGTTTGTTATCGGACAATCGTTGTAGAGAAGCTAGAATTTGGTGAAGATGT
GGGCGGCTTCTTGTCTTGCGTCATGTTGTGCGGCGTGCGCTTGTGATGCTTGCCGTACGGTAGTGTCTGGGATCAGCCGACGTTCTGCAA
GGATTGCCTATTGTGGTCTTTTTGCTTTGTCCCTAATTGTCTCGTGGATTCTTAGGGAGGTTGCTGCCCCTCTAATGGAGAAAATACCAT
GGATTAATAGCTTTCACACGACACCAAACAGAGAATGGTTTGAAACAGATGCTGTGCTTCGGGTTAGCTTGGGGAACTTCCTATTTTTCA
CTATTTTAGCAATCTTAATGATTGGTGTAAAGAACCAGAAAGACCCACGTGACAGTATGCACCATGGTGGTTGGATGATGAAAATCATTT
GCTGGTGCCTCATGGTAATATTCATGTTTTTCCTTCCAAATGGAATCATCAGCTTCTATGAGACAATTTCCAAGTTTGGTTCCGGACTAT
TTCTCCTTGTGCAAGTTGTGCTCTTGTTGGATTTTGTGCACAGTTGGAATGACAAATGGGTTGGATACGATGAGCAGTTCTGGTATGTGG
CATTGCTTGTCGTTTCACTTGTATGTTATGTGGCTACCTTTGCATTCAACGGACTGCTCTTCCACTTTTTCACTCCATCTGGACAGGATT
GTGGGCTTAACACTTTCTTTATAGTGATGACCCTTATATTGATCTTCGGCTTTGCTGTTGTTACGCTGCATCCATCGGTAGGTGGAAGTA
TTTTACCTGCATCAGTTTTATCTCTGTACTGTACATACCTTTGCTACAGTGCACTTGCAAGTGAACCTAGGGATTATGAGTGCAACGGTC
TACATAAGCACTCCAAGGCTGTTTCCAGTGGCACACTTGCATTAGGGCTGCTAACAACAGTTCTATCTGTTGTCTACTCTGCTGTTCGTG
CTGGCTCTTCTACAACTCTGCTTTCTCCTCCAAGCTCACCACGTGCAGGGAAGCCCTTGCTACCATTGGACAAGGTCGATGAGGAGGAAG
AAAAAGAGAGATCTAAGCCAGTCTCATACTCCTATTCTTTCTTCCACCTTATCTTTTCTCTCGCTAGTATGTACTCTGCAATGCTTCTTA
CAGGTTGGTCAACCTCTGTGGGGGAGAGCGGAAATTTAGTGGACGTTGGGTGGCCATCTGTCTGGGTCAGGATTGTGACCGGGTGGGCAA
CTGCAGCTCTGTTCATCTGGTCTCAGGTTGCTCCAATTCTGTTTCCGGACAGAGAGTTCTGAGTAATCGAAGGAATGAATGTTACAGTTA
CTACACTAATATGATAAACTTAAGTTTGAACAATGTTTTAAAAGGAACAGGACTACCTTAATGCAAGGATTTCGATGCTCCTTTTCTGTC
ATGTGGATAGTGTGTAAGACGATGCCACAGTGATTTTATTCAACTGTATATTTCATATGCGTATTGTGTGGTAATAAATATGGGCTTGCT
TTTATAAATGTAGTACTAGTTTTTTTAAAAATCATTTATTAGAGAAATTTTTATATGTTA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	2
Solanum tuberosum	IVROOT	Root	5850	4
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	3
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	STOL	Stolon	6462	3
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	4
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	4
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (31)

Alignment image suppressed for unigene with 31 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 1 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	972	TMS_TDE	19
2	22797	TMS_TDE	19
5	57399	TMS_TDE Holin_scret_tox	13
1.1	102326	TMS membrane protein/tumour differentially expressed protein - Cellular Component: membrane (GO:0016020)	16
2	119458	TMS membrane protein/tumour differentially expressed protein - Cellular Component: membrane (GO:0016020)	15
5	130226	TMS membrane protein/tumour differentially expressed protein - Cellular Component: membrane (GO:0016020)	11

Preceding Unigenes (1)

Unigene	Build
SGN-U244174	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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