Sol Genomics Network

Unigene SGN-U270315

Unigene Basic Information

Unigene ID:	SGN-U270315
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270315
mRNA sequence:	Length: 1110 bp

>SGN-U270315 Solanum tuberosum #4 (22 members)
CGATCACCGAGGTTACTTTGCTATTTTTTCTCCGATCGAAGATCAACTATTCCGATTTCCGACGATGAATGTGATGGATTCAGCTCCGGC
TAAAAGTAGCTTAATGAGTCCCGAATCTGATATTCAGAGAACACAGTATCCATATGTGACTGGGACATCAGTTGTCGGCATCAAGTACAA
AGATGGTATTCTCTTGGCAGCTGACATGGGAGGTTCCTATGGTTCAACGATACGTTACAAGAGTGTGGAGCGATTAAAGCCAGTGGGAAA
GCACTCCCTTCTTGGTGCAAGTGGTGAAATAAGTGATTTTCAGGAGATAATGAAGTACCTTGATGAGCTTATCCTGTATGACAACATGTG
GGATGATGGAAACTCCTTGGGTCCCAAAGAAGTGCATAACTACCTAACACGTGTGATGTATAATCGTCGCAACAAGTTCAACCCACTTTG
GAATTCACTTGTTCTTGGTGGAGTGAAAAATGGACAGAAGTATCTTGGAACAGTTAGTATGATTGGTGTGCATTACGAGGACAACCATGT
GGCTACTGGATTCGGGAATCACCTTGCAAGGCCCATTCTCCGTGACGAATGGAATGAAAACTTGAGCTATGAAGAGGGCGTTAAGTTATT
GGAGAAATGTATGCGTGTGCTTTTGTATCGAGACAGATCTGCAGTCAACAAGCTTCAGATTGCAAAAATCACAGAAGAGGGAGTAACAAT
TTCTCAGCCATACTCATTGAAGACTTTCTGGAACTTCTCTGCTTTCCAGAATCCAACTGTTGGTGCTGAGGGTTCATGGTAATAACTGGC
TGCTGCATCGACTAGGTTTCATGAAGGAACTACACAATGTGTTGCAGATTTTAGAACTCGCTATGTCTTCATGGAAATGATGTTTGATAG
AACCTGTGTAATTTGAATTGTCTATGGTCTTTCTAGGCTTTTTCCTAATGTAAACTATAAAGACATGTCACCTGATGTTTCACTTTTCCT
TCACTATGTGAGATTGTTATCTTCCAAAGTTATTTGGCATGCCATGGCTTTATCTCAGCTATGGAACACTGTCGTTTTGCCTGGTTGATA
TATTTTCTAAGTTCATGACAGAAGTAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	3
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (22)

Alignment image suppressed for unigene with 22 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	99	Peptidase_T1	128
2	25592	Peptidase_T1 Pept_T1A_subB	6
5	59586	Peptidase_T1 Pept_T1A_subB	6
1.1	101456	20S proteasome A and B subunits - Molecular Function: threonine endopeptidase activity (GO:0004298) - Cellular Component: proteasome core complex (sensu Eukaryota) (GO:0005839) - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511)	138
2	122168	20S proteasome A and B subunits - Molecular Function: threonine endopeptidase activity (GO:0004298) - Cellular Component: proteasome core complex (sensu Eukaryota) (GO:0005839) - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511) Peptidase T1A proteasome beta-subunit - Molecular Function: endopeptidase activity (GO:0004175) - Cellular Component: proteasome core complex (sensu Eukaryota) (GO:0005839) - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511)	5
5	132387	20S proteasome A and B subunits - Molecular Function: threonine endopeptidase activity (GO:0004298) - Cellular Component: proteasome core complex (sensu Eukaryota) (GO:0005839) - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511) Peptidase T1A proteasome beta-subunit - Molecular Function: endopeptidase activity (GO:0004175) - Cellular Component: proteasome core complex (sensu Eukaryota) (GO:0005839) - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511)	5

Preceding Unigenes (1)

Unigene	Build
SGN-U244919	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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