Sol Genomics Network

Unigene SGN-U271507

Unigene Basic Information

Unigene ID:	SGN-U271507
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271507
mRNA sequence:	Length: 1590 bp

>SGN-U271507 Solanum tuberosum #4 (14 members)
TACAGACAGCAGCCATACTTAACCAACGGCCTCCAGTCTCCTTCTGACTCTCCACCATCCGATCTCTGTATAAATAGGTACAGATTCGTA
TCTCAGGAGTCAGGACTAACGGAAAACGGGAAGAGAGATGGAGGTGAGAGCTAGAGCCCCAGGGAAAATCATAGTGGCTGGAGAACATGC
TGTGGTTCACGGATCAGCTGCCGTCGCTGCCTCTATCGATCTCTATACTTACGTCTCCCTTCGCTTTCCTACTCCTGCTGATAATGACGA
AACACTAAGCCTCCAGCTTAAGGATGTGTCCTTAGAATTTTCCTGGCCAATTGCAAGAATTAAAGAGGCTTTTCCAAACTTGGAAAATCC
GATTCCACCTTCCTCATGCTCGCTGGAGACTCTTAAATTAATTGCTTCTTTAGTCGATGAGCAGAACATTCCTGAGGCAAATATAGGTCT
CGCTGCTGGTGTCACAGCTTTTCTTTGGCTGTTCACCTCAATCCATGGATGCAAACCAGCTAAAGCAGTTGTCAATTCTGAGCTTCCATT
GGGATCAGGCTTGGGTTCGTCCGCAGCTTTTTGTGTTGCACTCTCCGCAGCCATTCTTGCTTTGTCAGATTCAGTCACTATGGATTTCAG
CCACCAAGGGTGGCAAGTATTTGGAGAGAATGAGCTGGAATTGGTGAATAAATGGGCTTTCGAAGGCGAGAAAATAATTCATGGGAAGCC
ATCTGGTATTGACAACACAGTGAGCACATATGGAAACATGATCAAGTTTAAGTCAGGCGATTTGACACGCCTCAAAACAAACATGCCACT
TAAAATGCTGATCACTAACACAAAGGTTGGGAGAAATACAAAGGCATTGGTGGCTAGCGTCTCCGAGAGGACCTTGAGGCATCCGACTGC
AATGGCTTCTGTGTTTACTGCAGTGGATTCTATCAGTAATGAGGTGGCTGCAATTATTCAATCACCTGTCTCTGATGATCTTGCCATAAC
TGAGAAAGAAGAAAAACTGGCAGAGTTGATGGAGATGAACCAAGGATTGCTTCAGTGCATGGGTGTTAGCCATGCTTCCATAGAAACTAT
TCTTCGAACAACTCTAAAGTACAAACTGTCTACCAAGTTAACTGGAGCTGGTGGTGGAGGCTGTGTTTTGACATTACTACCAACCCTTCT
ATCAGGAACAGTCGTTGATAAAGTGATAGCTGATTTAGAAACATGCGGATTCCAATGCCTGCTTGCTGGAATTGGTGGAAATGGCGTAGA
ATTTTCATATAGCGGCATTCCTGATATAGGAGCCAACGGAGGCAATTTGTCATGAGATCTATCTCTGCACTCTTGAATGTGGACATGGAG
GTGCGCTTCGCAATCTAAAGAAACTCAGATCCCCGCCATCAACTTGTTTTATAGTTCAGGTCTTTGATTAAGAACTTGCAATAATTATAG
AGACAAATTTCATTTAGTTTTCTTTTTATTTCTTCTCGCCAAAAATATAAATGGCAATTGGAAAATTCCCCGTTTTGATAATTGGAAGCA
CACGTTAATTAATTTTACTTCCAAAGTTACTCTTAAAAAAAAAAAACTCGAGGGGGGCCC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	TUBS	Tubers	5976	3
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1

mRNA member sequences (14)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 9 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	3264	GHMPknse_ATP GHMP_kinase L6_membrane Pmev_kin_Gpos Mev_gal_kin Pmev_kin_erg8 Galactokinase Mev_galkinase	5
2	26172	GHMPknse_ATP GHMP_kinase L6_membrane Pmev_kin_Gpos Mev_gal_kin Pmev_kin_erg8 Galactokinase Mev_galkinase	5
5	60136	GHMPknse_ATP GHMP_kinase L6_membrane Pmev_kin_Gpos Mev_gal_kin Pmev_kin_erg8 Galactokinase Mev_galkinase	5
1.1	105079	Mevalonate kinase/phosphomevalonate kinase - Molecular Function: mevalonate kinase activity (GO:0004496) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) Mevalonate kinase - Molecular Function: mevalonate kinase activity (GO:0004496) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: isoprenoid biosynthesis (GO:0008299) GHMP kinase ATP-binding region - Molecular Function: ATP binding (GO:0005524) Mevalonate and galactokinase - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: metabolism (GO:0008152) - Molecular Function: kinase activity (GO:0016301) - Molecular Function: phosphotransferase activity alcohol group as acceptor (GO:0016773) GHMP kinase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: kinase activity (GO:0016301) - Biological Process: phosphorylation (GO:0016310) GHMP kinase C terminal	3
2	125035	GHMP kinase ATP-binding region - Molecular Function: ATP binding (GO:0005524) Mevalonate kinase - Molecular Function: mevalonate kinase activity (GO:0004496) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: isoprenoid biosynthesis (GO:0008299) GHMP kinase C terminal Mevalonate kinase/phosphomevalonate kinase - Molecular Function: mevalonate kinase activity (GO:0004496) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) Mevalonate and galactokinase - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: metabolism (GO:0008152) - Molecular Function: kinase activity (GO:0016301) - Molecular Function: phosphotransferase activity alcohol group as acceptor (GO:0016773) GHMP kinase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: kinase activity (GO:0016301) - Biological Process: phosphorylation (GO:0016310)	3
5	135381	GHMP kinase ATP-binding region - Molecular Function: ATP binding (GO:0005524) Mevalonate kinase - Molecular Function: mevalonate kinase activity (GO:0004496) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: isoprenoid biosynthesis (GO:0008299) GHMP kinase C terminal Mevalonate kinase/phosphomevalonate kinase - Molecular Function: mevalonate kinase activity (GO:0004496) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) Mevalonate and galactokinase - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: metabolism (GO:0008152) - Molecular Function: kinase activity (GO:0016301) - Molecular Function: phosphotransferase activity alcohol group as acceptor (GO:0016773) GHMP kinase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: kinase activity (GO:0016301) - Biological Process: phosphorylation (GO:0016310)	3

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (2)

Unigene	Build
SGN-U248366	Solanum tuberosum #3
SGN-U257697	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: