Sol Genomics Network

Unigene SGN-U572728

Unigene Basic Information

Unigene ID:	SGN-U572728
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 2241 bp

>SGN-U572728 Tomato 200607 #2 (104 members)
AGACGTTTATGAGTTTATGTAATGAGTCGATTTTGTTAGAGAACACGGATTCGTAAAGTAACAAACCTTTACCCTAGCAAAGTACACCAC
TACCACACTGCAAATCTGCAACATCTATAAAAAGGAACTCTCCATATCACATTTTCTCCCTCTTATCCCTCTCTCTCTGTAACACTTCGA
TTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATC
ATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGC
CGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTC
GTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGTACATTGTGAGGGGAGGTAGAGATTTGTT
CAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGGACCTGCTCAAGCCCAGAACTTGAG
GGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGG
GTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCA
GGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTC
AATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGG
AAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTC
TGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGCATTTTACTTGG
TGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATG
CATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGA
AGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGT
TGTCTTGGCTGGCCGCCGCTTTTATGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGG
TGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCA
GATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTAT
GCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAA
TCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGG
AGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATC
TGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGA
AGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTTTTTTATGTAAC
GAATAACAGATTCAAAATTTGGGAACCCTTGTAGCAACTATAAAATGTGGGTTATGGCAGTTAGCATGTTTCAGTCTCTAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Solyc07g053280	Solyc07g053280

Genomic locations (0)

None

Library representation (32)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	3
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	14
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	6
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	5
Solanum lycopersicum	LA	Leaf Mature leaves	6589	3
Solanum lycopersicum	LC	Leaf Mature leaves	5712	2
Solanum lycopersicum	LeMiToFr02	fruit	18697	3
Solanum lycopersicum	LeMiToLf01	leaf	30679	9
Solanum lycopersicum	LeTransC6	leaf 1.5-month old plants	150	1
Solanum lycopersicum	Sl_RootInf02	root and collar Three weeks old	333	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	5
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	6
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	4
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	3
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	4
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	5
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	vSlycmRNA		8362	3

mRNA member sequences (104)

Alignment image suppressed for unigene with 104 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (5)

Annotations (manual: 1 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (2)

Unigene	Build
SGN-U312795	Tomato 200607 #1
SGN-U312798	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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